miRBase entry: tca-mir-3829

Stem-loop tca-mir-3829


Accession
MI0016291
Description
Tribolium castaneum tca-mir-3829 precursor miRNA


Sequence

guucaaucagcagcauaCAGAGUUCCUCGAUGCCGUUUCuucgaguggauugaCUUGGUUUCAAGGAACCCUAAaugcugcuggugauua
..(((.((((((((((..((.((((((.((.((((..((.((.....))..))..)))).)).)))))).))..)))))))))))))...

Structure
-gu   a          aC  A      C  U    UU  -u  g 
   uca ucagcagcau  AG GUUCCU GA GCCG  UC  uc a
   ||| ||||||||||  || |||||| || ||||  ||  || g
   agu ggucgucgua  UC CAAGGA CU UGGU  ag  ag u
auu   -          AA  C      A  U    UC  uu  g 


Annotation confidence Not enough data
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Genome context
ChLGX: 5788970-5789059 [-]
Clustered miRNAs
36 other miRNAs are < 10 kb from tca-mir-3829
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3829-5p

Accession MIMAT0018688
Description Tribolium castaneum tca-miR-3829-5p mature miRNA
Sequence 18 - CAGAGUUCCUCGAUGCCGUUUC - 39
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3829-3p

Accession MIMAT0018689
Description Tribolium castaneum tca-miR-3829-3p mature miRNA
Sequence 54 - CUUGGUUUCAAGGAACCCUAA - 74
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696