miRBase entry: tca-mir-316

Stem-loop tca-mir-316


Accession
MI0016305
Description
Tribolium castaneum tca-mir-316 precursor miRNA
Gene family
MIPF0000254; mir-316

Literature search
1 open access papers mention tca-mir-316
(2 sentences)

Sequence

gccacacuugugaacgUGUCUUUUUCCGCUUUGCUGCcgcuguucugucgucgCCAGCAGAGAGGAUGAGGCUAGugcacgaguugacc
..((.(((((((.((..(((((..(((.((((((((.((.((......)).)).)))))))).))).)))))..)).)))))))))...

Structure
-gc  c       a  gU     UU   G        C  c  uu 
   ca acuugug ac  GUCUU  UCC CUUUGCUG cg ug  c
   || ||||||| ||  |||||  ||| |||||||| || ||   
   gu ugagcac uG  CGGAG  AGG GAGACGAC gc gc  u
cca  -       g  AU     -U   A        C  u  ug 


Annotation confidence Not enough data
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Genome context
ChLG3: 1000551-1000639 [+]

Database links

Mature tca-miR-316-5p

Accession MIMAT0018716
Description Tribolium castaneum tca-miR-316-5p mature miRNA
Sequence 17 - UGUCUUUUUCCGCUUUGCUGC - 37
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-316-3p

Accession MIMAT0018717
Description Tribolium castaneum tca-miR-316-3p mature miRNA
Sequence 54 - CCAGCAGAGAGGAUGAGGCUAG - 75
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696