Stem-loop sequence hsa-mir-548aa-1

Accession

MI0016689 (change log)

Symbol

HGNC:MIR548AA1

Description

Homo sapiens miR-548aa-1 stem-loop

Gene family

MIPF0000317; mir-548

Literature search

56 open access papers mention hsa-mir-548aa-1
(170 sentences)

Stem-loop

   -------cuu      uc           a  c             auuac 
5'           uauuag  uggugcaaaag aa ugugguuuuugcc     u
             ||||||  ||||||||||| || |||||||||||||      
3'           auaauc  accacguuuuc uu acaccaaaaacgg     u
   uuuguucaau      ca           a  a             acauu 

Deep sequencing

4145 reads, 1.44 reads per million, 139 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr8: 123348034-123348130 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-548aa-1

• hsa-mir-548aa-1: chr8: 123348034-123348130 [+]
• hsa-mir-548d-1: chr8: 123348034-123348130 [-]

Database links

• EntrezGene:MIR548AA1
• HGNC:MIR548AA1
• RNAcentral:URS000075DA4B_9606
• miRBase Tracker:MI0016689

Mature sequence hsa-miR-548aa

• Accession: MIMAT0018447
• Sequence: 55 - aaaaaccacaauuacuuuugcacca - 79
• Deep sequencing: 8078 reads, 140 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000012930C_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548aa
  • TargetScanVert:hsa-miR-548aa
  • miRDB:hsa-miR-548aa

References

1. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).