Stem-loop pma-mir-18b

Accession

MI0017018

Description

Petromyzon marinus pma-mir-18b precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

gugcuugcuuguguAAAGGUGCAUUUAGUGCAGAUAGuggcauagcuggcauucuACUGCUCUAUGUGCUCCUUCUUUcacaagaagucac
((((((.((((((..((((.((((.(((.(((((.((((.((....)).)))).).)))).))).)))).))))....))))))))).)))

Structure

   -   g      --uA    U    U   U    - U    g  u 
gug cuu cuugug    AAGG GCAU UAG GCAG A AGug ca a
||| ||| ||||||    |||| |||| ||| |||| | |||| ||  
cac gaa gaacac    UUCC CGUG AUC CGUC u uuac gu g
   u   -      UUUC    U    U   U    A c    g  c 

Annotation confidence Not enough data

Genome context

GL478379.1: 403671-403761 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from pma-mir-18b

Mature pma-miR-18b-5p

• Accession: MIMAT0019389
• Description: Petromyzon marinus pma-miR-18b-5p mature miRNA
• Sequence: 15 - AAAGGUGCAUUUAGUGCAGAUAG - 37
• Evidence: experimental ; 454 [1]

Mature pma-miR-18b-3p

• Accession: MIMAT0019390
• Description: Petromyzon marinus pma-miR-18b-3p mature miRNA
• Sequence: 56 - ACUGCUCUAUGUGCUCCUUCUUU - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383