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microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate |
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|---|---|
| PubMed ID | 20959416 |
| Authors | "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ" |
| Journal | "Proc Natl Acad Sci U S A |
| Volume | 107 |
| Pages | 19379-19383 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| pma-mir-1a | MI0016999 | None | None | None | - | ||
| pma-mir-1b | MI0017000 | None | None | None | - | ||
| pma-mir-1c | MI0017001 | None | None | None | - | ||
| pma-mir-1d | MI0017002 | None | None | None | - | ||
| pma-mir-7a-1 | MI0017003 | None | GL480045.1 | 16544 | 16631 | + | - |
| pma-mir-7a-2 | MI0017004 | None | GL501321.1 | 468603 | 468693 | + | - |
| pma-mir-7b | MI0017005 | None | None | None | - | ||
| pma-mir-9a-1 | MI0017006 | None | None | None | - | ||
| pma-mir-9a-2 | MI0017007 | None | GL492128.1 | 47 | 135 | + | - |
| pma-mir-9b | MI0017008 | None | None | None | - | ||
| pma-mir-10b | MI0017009 | None | None | None | - | ||
| pma-mir-10a | MI0017010 | None | None | None | - | ||
| pma-mir-15a | MI0017011 | None | GL477381.1 | 67883 | 67957 | - | - |
| pma-mir-15b | MI0017012 | None | GL480635.1 | 7879 | 7962 | + | - |
| pma-mir-16 | MI0017013 | None | None | None | - | ||
| pma-mir-17a | MI0017014 | None | GL478379.1 | 403379 | 403460 | + | - |
| pma-mir-17b | MI0017015 | None | GL478379.1 | 404297 | 404390 | + | - |
| pma-mir-17c | MI0017016 | None | None | None | - | ||
| pma-mir-18a | MI0017017 | None | None | None | - | ||
| pma-mir-18b | MI0017018 | None | GL478379.1 | 403671 | 403761 | + | - |
| pma-mir-19a | MI0017019 | None | None | None | - | ||
| pma-mir-19b | MI0017020 | None | GL478379.1 | 406814 | 406897 | + | - |
| pma-mir-19c | MI0017021 | None | GL478379.1 | 404996 | 405075 | + | - |
| pma-mir-20a | MI0017022 | None | GL478379.1 | 406609 | 406699 | + | - |
| pma-mir-20b | MI0017023 | None | GL496094.1 | 2639 | 2732 | + | - |
| pma-mir-22a | MI0017024 | None | GL477321.1 | 44900 | 44995 | + | - |
| pma-mir-22b | MI0017025 | None | None | None | - | ||
| pma-mir-23a | MI0017026 | None | GL477342.1 | 28461 | 28538 | + | - |
| pma-mir-23b | MI0017027 | None | GL477371.1 | 167592 | 167676 | - | - |
| pma-mir-24 | MI0017028 | None | GL477342.1 | 31004 | 31097 | + | - |
| pma-mir-25b | MI0017029 | None | GL478379.1 | 408922 | 409013 | + | - |
| pma-mir-26a-1 | MI0017030 | None | GL482776.1 | 5474 | 5560 | + | - |
| pma-mir-26a-2 | MI0017031 | None | GL477073.1 | 186582 | 186672 | + | - |
| pma-mir-26b | MI0017032 | None | GL476522.1 | 359432 | 359520 | + | - |
| pma-mir-27a | MI0017033 | None | GL477342.1 | 30392 | 30466 | + | - |
| pma-mir-27b | MI0017034 | None | GL477371.1 | 165960 | 166034 | - | - |
| pma-mir-29a | MI0017035 | None | GL477440.1 | 3408 | 3490 | + | - |
| pma-mir-29b | MI0017036 | None | None | None | - | ||
| pma-mir-29c | MI0017037 | None | None | None | - | ||
| pma-mir-29d | MI0017038 | None | GL477440.1 | 2295 | 2380 | + | - |
| pma-mir-30a | MI0017039 | None | None | None | - | ||
| pma-mir-30b | MI0017040 | None | GL476359.1 | 505642 | 505736 | - | - |
| pma-mir-30c | MI0017041 | None | GL476506.1 | 116022 | 116110 | + | - |
| pma-mir-30d | MI0017042 | None | None | None | - | ||
| pma-mir-30e | MI0017043 | None | None | None | - | ||
| pma-mir-30f-1 | MI0017044 | None | GL476506.1 | 125114 | 125191 | + | - |
| pma-mir-30f-2 | MI0017045 | None | GL476359.1 | 493312 | 493392 | - | - |
| pma-mir-30g | MI0017046 | None | None | None | - | ||
| pma-mir-31 | MI0017047 | None | None | None | - | ||
| pma-mir-33a | MI0017048 | None | GL476343.1 | 627920 | 628003 | + | - |
| pma-mir-33b | MI0017049 | None | None | None | - | ||
| pma-mir-92a | MI0017050 | None | GL478379.1 | 407029 | 407108 | + | - |
| pma-mir-96a | MI0017051 | None | None | None | - | ||
| pma-mir-100a | MI0017052 | None | GL476441.1 | 180226 | 180314 | - | - |
| pma-mir-100b | MI0017053 | None | None | None | - | ||
| pma-mir-100c | MI0017054 | None | GL476441.1 | 180229 | 180316 | + | - |
| pma-mir-103a | MI0017055 | None | GL480747.1 | 5387 | 5469 | + | - |
| pma-mir-103b | MI0017056 | None | GL476774.1 | 7874 | 7950 | - | - |
| pma-mir-124 | MI0017057 | None | None | None | - | ||
| pma-mir-125 | MI0017058 | None | GL476441.1 | 175523 | 175612 | - | - |
| pma-mir-126 | MI0017059 | None | GL479284.1 | 28772 | 28843 | + | - |
| pma-mir-128-1 | MI0017060 | None | GL476334.1 | 422133 | 422221 | + | - |
| pma-mir-128-2 | MI0017061 | None | GL477033.1 | 40713 | 40801 | + | - |
| pma-mir-129a | MI0017062 | None | None | None | - | ||
| pma-mir-130d | MI0017063 | None | None | None | - | ||
| pma-mir-130e | MI0017064 | None | None | None | - | ||
| pma-mir-130a | MI0017065 | None | GL479242.1 | 48513 | 48598 | - | - |
| pma-mir-130b | MI0017066 | None | None | None | - | ||
| pma-mir-130c | MI0017067 | None | None | None | - | ||
| pma-mir-132 | MI0017068 | None | None | None | - | ||
| pma-mir-133a | MI0017069 | None | None | None | - | ||
| pma-mir-133b | MI0017070 | None | None | None | - | ||
| pma-mir-135a | MI0017071 | None | GL476647.1 | 647673 | 647758 | - | - |
| pma-mir-135b | MI0017072 | None | None | None | - | ||
| pma-mir-137-1 | MI0017073 | None | GL477567.1 | 61955 | 62043 | + | - |
| pma-mir-137-2 | MI0017074 | None | None | None | - | ||
| pma-mir-138a | MI0017075 | None | GL479709.1 | 187234 | 187313 | + | - |
| pma-mir-138b | MI0017076 | None | GL477603.1 | 148354 | 148438 | + | - |
| pma-mir-140 | MI0017077 | None | None | None | - | ||
| pma-mir-143 | MI0017078 | None | None | None | - | ||
| pma-mir-144 | MI0017079 | None | GL482134.1 | 4314 | 4391 | - | - |
| pma-mir-145 | MI0017080 | None | None | None | - | ||
| pma-mir-146 | MI0017081 | None | None | None | - | ||
| pma-mir-147 | MI0017082 | None | GL482676.1 | 3574 | 3660 | + | - |
| pma-mir-152a | MI0017083 | None | GL479015.1 | 47019 | 47110 | - | - |
| pma-mir-152b | MI0017084 | None | GL479147.1 | 18075 | 18163 | + | - |
| pma-mir-153-1 | MI0017085 | None | None | None | - | ||
| pma-mir-153-2 | MI0017086 | None | None | None | - | ||
| pma-mir-153-3 | MI0017087 | None | None | None | - | ||
| pma-mir-155 | MI0017088 | None | None | None | - | ||
| pma-mir-181a | MI0017089 | None | None | None | - | ||
| pma-mir-181b-1 | MI0017090 | None | GL477358.1 | 3082 | 3180 | + | - |
| pma-mir-182 | MI0017091 | None | None | None | - | ||
| pma-mir-183 | MI0017092 | None | None | None | - | ||
| pma-mir-184 | MI0017093 | None | GL486664.1 | 9491 | 9574 | - | - |
| pma-mir-190a | MI0017094 | None | GL478866.1 | 17310 | 17389 | - | - |
| pma-mir-190b | MI0017095 | None | GL480176.1 | 11232 | 11321 | + | - |
| pma-mir-192 | MI0017096 | None | GL476486.1 | 89043 | 89127 | - | - |
| pma-mir-193 | MI0017097 | None | None | None | - | ||
| pma-mir-194 | MI0017098 | None | None | None | - | ||
| pma-mir-196a | MI0017099 | None | GL477881.1 | 105280 | 105359 | + | - |
| pma-mir-196b | MI0017100 | None | None | None | - | ||
| pma-mir-199a | MI0017101 | None | GL476397.1 | 465339 | 465417 | - | - |
| pma-mir-199b | MI0017102 | None | None | None | - | ||
| pma-mir-200b | MI0017103 | None | None | None | - | ||
| pma-mir-203a | MI0017104 | None | None | None | - | ||
| pma-mir-203b | MI0017105 | None | GL476390.1 | 628538 | 628627 | + | - |
| pma-mir-204 | MI0017106 | None | None | None | - | ||
| pma-mir-205a | MI0017107 | None | GL476785.1 | 168784 | 168858 | + | - |
| pma-mir-205b | MI0017108 | None | GL481409.1 | 1855 | 1928 | + | - |
| pma-mir-208 | MI0017109 | None | GL478284.1 | 33837 | 33928 | + | - |
| pma-mir-210 | MI0017110 | None | GL476669.1 | 301617 | 301697 | - | - |
| pma-mir-212 | MI0017111 | None | GL487767.1 | 279 | 367 | - | - |
| pma-mir-216a | MI0017112 | None | GL476438.1 | 661741 | 661824 | - | - |
| pma-mir-216b | MI0017113 | None | GL476438.1 | 664121 | 664209 | - | - |
| pma-mir-217a | MI0017114 | None | GL476438.1 | 660387 | 660455 | - | - |
| pma-mir-218a-1 | MI0017115 | None | GL476529.1 | 128989 | 129067 | + | - |
| pma-mir-218a-2 | MI0017116 | None | None | None | - | ||
| pma-mir-218b | MI0017117 | None | None | None | - | ||
| pma-mir-221 | MI0017118 | None | None | None | - | ||
| pma-mir-222 | MI0017119 | None | None | None | - | ||
| pma-mir-281a | MI0017120 | None | GL476811.1 | 83187 | 83273 | - | - |
| pma-mir-301a | MI0017121 | None | GL478599.1 | 33331 | 33429 | - | - |
| pma-mir-301b | MI0017122 | None | GL479242.1 | 40480 | 40567 | - | - |
| pma-mir-302 | MI0017123 | None | None | None | - | ||
| pma-mir-315 | MI0017124 | None | GL477456.1 | 408751 | 408827 | - | - |
| pma-mir-338b | MI0017125 | None | None | None | - | ||
| pma-mir-430f | MI0017126 | None | GL477695.1 | 64624 | 64713 | - | - |
| pma-mir-375a | MI0017127 | None | GL476436.1 | 561565 | 561658 | - | - |
| pma-mir-375b | MI0017128 | None | None | None | - | ||
| pma-mir-429 | MI0017129 | None | None | None | - | ||
| pma-mir-430a | MI0017130 | None | GL481024.1 | 21970 | 22058 | - | - |
| pma-mir-430b | MI0017131 | None | GL481024.1 | 30645 | 30732 | - | - |
| pma-mir-430c | MI0017132 | None | None | None | - | ||
| pma-mir-430d | MI0017133 | None | None | None | - | ||
| pma-mir-430e | MI0017134 | None | None | None | - | ||
| pma-mir-451 | MI0017135 | None | GL482134.1 | 3563 | 3635 | - | - |
| pma-mir-456 | MI0017136 | None | GL476784.1 | 59312 | 59396 | + | - |
| pma-mir-459 | MI0017137 | None | None | None | - | ||
| pma-mir-497 | MI0017138 | None | GL482751.1 | 8702 | 8783 | + | - |
| pma-mir-551 | MI0017139 | None | GL476399.1 | 721621 | 721695 | + | - |
| pma-mir-875 | MI0017140 | None | GL476481.1 | 178382 | 178463 | + | - |
| pma-mir-1329 | MI0017141 | None | GL476693.1 | 34374 | 34460 | - | - |
| pma-mir-1788a | MI0017142 | None | GL484476.1 | 286105 | 286185 | - | - |
| pma-mir-1788b | MI0017143 | None | GL484476.1 | 286098 | 286190 | + | - |
| pma-let-7a-1 | MI0017144 | None | GL482754.1 | 264479 | 264586 | - | - |
| pma-let-7a-2 | MI0017145 | None | None | None | - | ||
| pma-let-7a-3 | MI0017146 | None | GL476357.1 | 309640 | 309725 | - | - |
| pma-let-7a-4 | MI0017147 | None | None | None | - | ||
| pma-let-7b | MI0017148 | None | None | None | - | ||
| pma-let-7c | MI0017149 | None | None | None | - | ||
| pma-let-7d | MI0017150 | None | GL476357.1 | 302830 | 302915 | - | - |
| pma-mir-4541 | MI0017151 | None | None | None | - | ||
| pma-mir-4542 | MI0017152 | None | None | None | - | ||
| pma-mir-4543 | MI0017153 | None | GL477379.1 | 15215 | 15288 | + | - |
| pma-mir-4544 | MI0017154 | None | GL479979.1 | 15324 | 15409 | - | - |
| pma-mir-4545 | MI0017155 | None | GL477613.1 | 23220 | 23306 | - | - |
| pma-mir-4546 | MI0017156 | None | None | None | - | ||
| pma-mir-4547 | MI0017157 | None | GL490208.1 | 4315 | 4407 | - | - |
| pma-mir-4548 | MI0017158 | None | GL478432.1 | 44731 | 44810 | - | - |
| pma-mir-4549 | MI0017159 | None | None | None | - | ||
| pma-mir-4550 | MI0017160 | None | GL479849.1 | 132341 | 132440 | + | - |
| pma-mir-4551 | MI0017161 | None | None | None | - | ||
| pma-mir-4552 | MI0017162 | None | GL476486.1 | 38486 | 38562 | - | - |
| pma-mir-4553 | MI0017163 | None | GL484089.1 | 12621 | 12697 | + | - |
| pma-mir-4554 | MI0017164 | None | GL476379.1 | 351767 | 351853 | - | - |
| pma-mir-4555 | MI0017165 | None | GL477983.1 | 6418 | 6514 | + | - |
| pma-mir-4556 | MI0017166 | None | GL477380.1 | 355957 | 356034 | - | - |
| pma-mir-4557 | MI0017167 | None | GL479154.1 | 395632 | 395727 | + | - |
| pma-mir-4558 | MI0017168 | None | GL492550.1 | 2294 | 2377 | - | - |
| pma-mir-4559 | MI0017169 | None | GL476691.1 | 471887 | 471965 | - | - |
| pma-mir-4560 | MI0017170 | None | None | None | - | ||
| pma-mir-4561 | MI0017171 | None | GL486431.1 | 6793 | 6871 | + | - |
| pma-mir-4562 | MI0017172 | None | GL476616.1 | 588877 | 588970 | + | - |
| pma-mir-4563 | MI0017173 | None | GL476637.1 | 355081 | 355162 | + | - |
| pma-mir-4564 | MI0017174 | None | GL479009.1 | 180444 | 180519 | - | - |
| pma-mir-4565 | MI0017175 | None | GL476843.1 | 220081 | 220163 | - | - |
| pma-mir-4566 | MI0017176 | None | GL477852.1 | 8288 | 8376 | + | - |
| pma-mir-4567 | MI0017177 | None | GL476995.1 | 164946 | 165028 | + | - |
| pma-mir-4568 | MI0017178 | None | GL477103.1 | 47497 | 47596 | - | - |
| pma-mir-4569 | MI0017179 | None | GL476401.1 | 318883 | 318964 | + | - |
| pma-mir-4570 | MI0017180 | None | GL477899.1 | 7547 | 7627 | - | - |
| pma-mir-4571 | MI0017181 | None | GL476329.1 | 1110152 | 1110242 | - | - |
| pma-mir-4572 | MI0017182 | None | GL487722.1 | 3531 | 3616 | + | - |
| pma-mir-4573 | MI0017183 | None | GL476365.1 | 197800 | 197881 | - | - |
| pma-mir-4574 | MI0017184 | None | GL477899.1 | 8221 | 8305 | - | - |
| pma-mir-4575 | MI0017185 | None | None | None | - | ||
| pma-mir-4576 | MI0017186 | None | GL478211.1 | 11053 | 11126 | - | - |
| pma-mir-4577 | MI0017187 | None | GL477076.1 | 80304 | 80378 | - | - |
| pma-mir-4578 | MI0017188 | None | GL478614.1 | 34784 | 34881 | - | - |
| pma-mir-4579 | MI0017189 | None | None | None | - | ||
| pma-mir-4580 | MI0017190 | None | GL477282.1 | 79322 | 79400 | - | - |
| pma-mir-4581 | MI0017191 | None | GL493616.1 | 3649 | 3727 | + | - |
| pma-mir-4582 | MI0017192 | None | None | None | - | ||
| pma-mir-4583 | MI0017193 | None | GL488683.1 | 114 | 190 | - | - |
| pma-mir-4584 | MI0017194 | None | GL477576.1 | 165831 | 165911 | - | - |
| pma-mir-4585 | MI0017195 | None | GL481496.1 | 10827 | 10907 | + | - |
| pma-mir-4586 | MI0017196 | None | GL476547.1 | 300305 | 300385 | - | - |
| pma-mir-4587 | MI0017197 | None | None | None | - | ||
| pma-mir-4588 | MI0017198 | None | GL476845.1 | 32702 | 32780 | + | - |
| pma-mir-4589 | MI0017199 | None | GL477204.1 | 77670 | 77759 | + | - |
| pma-mir-4590 | MI0017200 | None | None | None | - | ||
| pma-mir-4591 | MI0017201 | None | GL487384.1 | 6821 | 6897 | - | - |
| pma-mir-4592 | MI0017202 | None | GL479650.1 | 5435 | 5534 | - | - |
| pma-mir-4593 | MI0017203 | None | None | None | - | ||
| pma-mir-4594 | MI0017204 | None | GL476953.1 | 198058 | 198138 | - | - |
| pma-mir-4595 | MI0017205 | None | GL479869.1 | 111747 | 111831 | - | - |
| pma-mir-4596 | MI0017206 | None | GL476944.1 | 439753 | 439842 | - | - |
| pma-mir-4597 | MI0017207 | None | GL481093.1 | 5777 | 5871 | - | - |
| pma-mir-4598 | MI0017208 | None | GL485986.1 | 16364 | 16460 | + | - |
| pma-mir-4599a | MI0017209 | None | GL477453.1 | 341342 | 341422 | + | - |
| pma-mir-4599b | MI0017210 | None | GL477453.1 | 339630 | 339711 | + | - |
| pma-mir-4600 | MI0017211 | None | GL477317.1 | 177083 | 177149 | - | - |
| pma-mir-4601 | MI0017212 | None | GL476642.1 | 559931 | 560004 | - | - |
| pma-mir-4602 | MI0017213 | None | GL476339.1 | 112033 | 112118 | + | - |
| pma-mir-4603 | MI0017214 | None | GL485342.1 | 7631 | 7722 | + | - |
| pma-mir-4604 | MI0017215 | None | GL480374.1 | 10994 | 11081 | - | - |
| pma-mir-4605 | MI0017216 | None | GL477647.1 | 47937 | 48018 | - | - |
| pma-mir-4606 | MI0017217 | None | GL476404.1 | 157798 | 157878 | - | - |
| pma-mir-4607 | MI0017218 | None | GL480960.1 | 60356 | 60441 | + | - |
| pma-mir-4608 | MI0017219 | None | GL480040.1 | 17960 | 18043 | + | - |
| pma-mir-4609 | MI0017220 | None | None | None | - | ||
| pma-mir-4610 | MI0017221 | None | GL476547.1 | 547046 | 547136 | + | - |
| pma-mir-4611 | MI0017222 | None | GL480415.1 | 6839 | 6925 | - | - |
| pma-mir-4612 | MI0017223 | None | GL479632.1 | 233564 | 233656 | + | - |
| pma-mir-4613 | MI0017224 | None | None | None | - | ||
| pma-mir-4614 | MI0017225 | None | GL476742.1 | 78541 | 78618 | + | - |
| pma-mir-4615 | MI0017226 | None | GL477323.1 | 210760 | 210850 | + | - |
| pma-mir-4616 | MI0017227 | None | GL476484.1 | 136801 | 136873 | - | - |
| pma-mir-4617 | MI0017228 | None | None | None | - | ||
| pma-mir-4618 | MI0017229 | None | GL476931.1 | 33827 | 33904 | + | - |
| pma-mir-4619 | MI0017230 | None | GL481737.1 | 13511 | 13608 | + | - |
| pma-mir-4620 | MI0017231 | None | GL487652.1 | 4426 | 4508 | + | - |
| pma-mir-4621 | MI0017232 | None | GL479944.1 | 10313 | 10392 | + | - |
| pma-mir-4622 | MI0017233 | None | GL476641.1 | 187820 | 187901 | - | - |
| pma-mir-4623 | MI0017234 | None | None | None | - | ||
| pma-mir-4624 | MI0017235 | None | None | None | - | ||
| pma-mir-4625 | MI0017236 | None | None | None | - | ||
| pma-mir-4626 | MI0017237 | None | GL478372.1 | 182424 | 182504 | - | - |
| pma-mir-4627 | MI0017238 | None | GL494084.1 | 236 | 310 | + | - |
| pma-mir-4628 | MI0017239 | None | None | None | - | ||
| pma-mir-4629 | MI0017240 | None | GL491681.1 | 1668 | 1742 | + | - |
| pma-mir-4630 | MI0017241 | None | None | None | - | ||
| pma-mir-4631 | MI0017242 | None | GL476419.1 | 296622 | 296696 | - | - |