Stem-loop pma-mir-23b

Accession

MI0017027

Description

Petromyzon marinus pma-mir-23b precursor miRNA

Gene family

MIPF0000027; mir-23

Sequence

cgagggccggaggguuccuggcaaggugauuugcgacugcguuucuaagaaaaAUCACAUUGCCAGGGAUUACCACuggcccucg
((((((((((.(((((((((((((.((((((((((....))).........))))))).)))))))))))..)).))))))))))

Structure

          a  --           g       ---------   a 
cgagggccgg gg  guuccuggcaa gugauuu         gcg c
|||||||||| ||  ||||||||||| |||||||         |||  
gcucccgguC CC  UAGGGACCGUU CACUAaa         ugc u
          A  AU           A       aagaaucuu   g 

Annotation confidence Not enough data

Genome context

GL477371.1: 167592-167676 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-23b

Mature pma-miR-23b

• Accession: MIMAT0019404
• Description: Petromyzon marinus pma-miR-23b mature miRNA
• Sequence: 54 - AUCACAUUGCCAGGGAUUACCAC - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383