Stem-loop pma-mir-29d

Accession

MI0017038

Description

Petromyzon marinus pma-mir-29d precursor miRNA

Gene family

MIPF0000009; mir-29

Sequence

cugcuccugggagCUGGUUUCACGUGGUGGCUUAGAcugugaugugccuucucUAGCACCAUAUGAAAUCGGUGUCccuggaguug
..(((((.((((((((((((((.((((((.((.(((..((.....))..)))..)))))))).)))))))))).)))).)))))..

Structure

cu     u    -          C      G  -U   cu  g 
  gcucc ggga gCUGGUUUCA GUGGUG CU  AGA  gu a
  ||||| |||| |||||||||| |||||| ||  |||  || u
  ugagg ccCU UGGCUAAAGU UACCAC GA  ucu  cg g
gu     u    G          A      -  Uc   uc  u 

Annotation confidence Not enough data

Genome context

GL477440.1: 2295-2380 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-29d

Mature pma-miR-29d-5p

• Accession: MIMAT0019420
• Description: Petromyzon marinus pma-miR-29d-5p mature miRNA
• Sequence: 14 - CUGGUUUCACGUGGUGGCUUAGA - 36
• Evidence: experimental ; 454 [1]

Mature pma-miR-29d-3p

• Accession: MIMAT0019421
• Description: Petromyzon marinus pma-miR-29d-3p mature miRNA
• Sequence: 54 - UAGCACCAUAUGAAAUCGGUGUC - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383