Stem-loop pma-mir-30c

Accession

MI0017041

Description

Petromyzon marinus pma-mir-30c precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

ggggcgagcaacUGUAAACAUCCUCGACUGAAAGCUgugcuccgcugcugugaaagggcUUUCAGUCAGAUGUUUGCGUUUGccgcgug
.(.(((.((((.((((((((((...(((((((((((.(....(((....)))..).))))))))))).)))))))))).))))))).).

Structure

g g   a    c          CUC           g gcuc   u 
 g gcg gcaa UGUAAACAUC   GACUGAAAGCU u    cgc g
 | ||| |||| ||||||||||   ||||||||||| |    |||  
 u cgc cGUU GCGUUUGUAG   CUGACUUUcgg a    gug c
g g   -    U          --A           g --aa   u 

Annotation confidence Not enough data

Genome context

GL476506.1: 116022-116110 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-30c

Mature pma-miR-30c-5p

• Accession: MIMAT0019425
• Description: Petromyzon marinus pma-miR-30c-5p mature miRNA
• Sequence: 13 - UGUAAACAUCCUCGACUGAAAGCU - 36
• Evidence: experimental ; 454 [1]

Mature pma-miR-30c-3p

• Accession: MIMAT0019426
• Description: Petromyzon marinus pma-miR-30c-3p mature miRNA
• Sequence: 60 - UUUCAGUCAGAUGUUUGCGUUUG - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383