Stem-loop pma-mir-100c

Accession

MI0017054

Description

Petromyzon marinus pma-mir-100c precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

gcccugccgacacaGACCCGUAGACACGAGCUUGUGcaaaacucccaccacaaguucggaucuacggguuuguggcgaccggcggaau
...((((((.((((((((((((((..((((((((((............))))))))))..)))))))))))))).....))))))...

Structure

gcc      ----a              CA          caaaa 
   cugccg     cacaGACCCGUAGA  CGAGCUUGUG     c
   ||||||     ||||||||||||||  ||||||||||      
   ggcggc     guguuugggcaucu  gcuugaacac     u
uaa      cagcg              ag          caccc 

Annotation confidence Not enough data

Genome context

GL476441.1: 180229-180316 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pma-mir-100c

Mature pma-miR-100c

• Accession: MIMAT0019440
• Description: Petromyzon marinus pma-miR-100c mature miRNA
• Sequence: 15 - GACCCGUAGACACGAGCUUGUG - 36
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383