Stem-loop pma-mir-144

Accession

MI0017079

Description

Petromyzon marinus pma-mir-144 precursor miRNA

Gene family

MIPF0000093; mir-144

Sequence

acgucugugcaGGAUAUCAUACUAUACUGUAAAucaaugcugaaccauUACAGUAUAUAUGAUGUGCUGCggagggcu
..((((.(((((.((((((((.((((((((((.(((....)))....)))))))))))))))))).)))))..)))).

Structure

ac    -g     G        C          ---A   a 
  gucu  ugcaG AUAUCAUA UAUACUGUAA    uca u
  ||||  ||||| |||||||| ||||||||||    |||  
  cggg  gCGUC UGUAGUAU AUAUGACAUu    agu g
-u    ag     G        -          acca   c 

Annotation confidence Not enough data

Genome context

GL482134.1: 4314-4391 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-144

Mature pma-miR-144-5p

• Accession: MIMAT0019474
• Description: Petromyzon marinus pma-miR-144-5p mature miRNA
• Sequence: 12 - GGAUAUCAUACUAUACUGUAAA - 33
• Evidence: experimental ; 454 [1]

Mature pma-miR-144-3p

• Accession: MIMAT0019475
• Description: Petromyzon marinus pma-miR-144-3p mature miRNA
• Sequence: 49 - UACAGUAUAUAUGAUGUGCUGC - 70
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383