Stem-loop pma-mir-222

Accession

MI0017119

Description

Petromyzon marinus pma-mir-222 precursor miRNA

Gene family

MIPF0000051; mir-221

Sequence

gcuguuggcacgcgagACUCAGAGCCCAGUGUAGAUCCUgccucgugcacacagcAGCUACAUUUGACUACUGGGUCUcuggugccaaccca
...((((((((..(((((((((((.(.(((((((...((((...((....)).))))))))))).).)).)))))))))..))))))))...

Structure

gcu        gc         -  C C       AUC    cuc  g 
   guuggcac  gagACUCAG AG C AGUGUAG   CUgc   gu c
   ||||||||  ||||||||| || | |||||||   ||||   ||  
   caaccgug  cUCUGGGUC UC G UUACAUC   GAcg   ca a
acc        gu         A  A U       ---    --a  c 

Annotation confidence Not enough data

Genome context

Unknown

Mature pma-miR-222-5p

• Accession: MIMAT0019533
• Description: Petromyzon marinus pma-miR-222-5p mature miRNA
• Sequence: 17 - ACUCAGAGCCCAGUGUAGAUCCU - 39
• Evidence: experimental ; 454 [1]

Mature pma-miR-222-3p

• Accession: MIMAT0019534
• Description: Petromyzon marinus pma-miR-222-3p mature miRNA
• Sequence: 56 - AGCUACAUUUGACUACUGGGUCU - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383