Stem-loop pma-mir-1788a

Accession

MI0017142

Description

Petromyzon marinus pma-mir-1788a precursor miRNA

Gene family

MIPF0000792; mir-1788

Sequence

caccugccucgGGCUUGUUUUACCUUGCCUGUGgcucgcagcgaugacacaCAGGCAGCUGAAGCAAGCCUGAggcggaga
...(((((((((((((((((((.((.(((((((..(((......)))..))))))))).)))))))))))))))))))...

Structure

cac                   C  U       gc   ca 
   cugccucgGGCUUGUUUUA CU GCCUGUG  ucg  g
   ||||||||||||||||||| || |||||||  |||   
   ggcggAGUCCGAACGAAGU GA CGGACac  agu  c
aga                   C  -       ac   ag 

Annotation confidence Not enough data

Genome context

GL484476.1: 286105-286185 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-1788a

Mature pma-miR-1788a-5p

• Accession: MIMAT0019561
• Description: Petromyzon marinus pma-miR-1788a-5p mature miRNA
• Sequence: 12 - GGCUUGUUUUACCUUGCCUGUG - 33
• Evidence: experimental ; 454 [1]

Mature pma-miR-1788a-3p

• Accession: MIMAT0019562
• Description: Petromyzon marinus pma-miR-1788a-3p mature miRNA
• Sequence: 52 - CAGGCAGCUGAAGCAAGCCUGA - 73
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383