Stem-loop osa-MIR812l

Accession

MI0017246

Description

Oryza sativa osa-MIR812l precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812l
(15 sentences)

Sequence

5375 reads, 3629 reads per million, 2 experiments

aguacuuccuccguccuauuuuaagugcaaccauauauuuucguauucaauuuugaucguucgucuuauuuuaauuuuuuuguaauuaauauuuuuguuguuauaagaugauaaaacaugcauaguauuuuacgcgugacuuauguuuuaaauuuuuucuaaaauuuuuuuaaauaagACGAACGGUUAAAGUUGGACGCGGaaaauuauggaugcacuuaaagugggauggagggaguauu
.((((((((((((((((((((((((((((.(((((..(((((((.((((((((((((((((((((((((((..(((.(((((((((.((((....))))))))))))).)))....(((((.(((....))).)))))...........(((((((....)))))))....)))))))))))))))))))))))))).)))))))..))))).)))))))))))))))))))))))))))).

Structure

a                            a     ua       a                          ---------------------------------------------------------ua   u         u    u 
 guacuuccuccguccuauuuuaagugca ccaua  uuuucgu uucaauuuugaucguucgucuuauuu                                                           auu uuuuguaau aaua u
 |||||||||||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||                                                           ||| ||||||||| ||||  
 uaugagggagguagggugaaauucacgu gguau  aaaGGCG AGGUUGAAAUUGGCAAGCAgaauaaa                                                           uag agaauauug uugu u
u                            a     ua       C                          uuuuuuuaaaaucuuuuuuaaauuuuguauucagugcgcauuuuaugauacguacaaaa   u         -    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature osa-miR812l

• Accession: MIMAT0019667
• Description: Oryza sativa osa-miR812l mature miRNA
• Sequence: 179 - ACGAACGGUUAAAGUUGGACGCGG - 202
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833