miRBase entry: sko-mir-4818d

Stem-loop sko-mir-4818d


Accession
MI0017552
Description
Saccoglossus kowalevskii sko-mir-4818d precursor miRNA
Gene family
MIPF0001211; mir-4818


Sequence

gcagcacuguguugaguguauccucucuauugaguacaacuguggauagaucacaucucgCAUUGCACUCAAUAGUGGGGCuccuuucagcaccugauauc
.(((....((((((((.....((((.(((((((((.(((.(((((((.......))).))))))).))))))))).)))).....))))))))))).....

Structure
----g   cacu        uguau    u         a   c    -   ag 
     cag    guguugag     ccuc cuauugagu caa ugug gau  a
     |||    ||||||||     |||| ||||||||| ||| |||| |||  u
     guc    cacgacuu     GGGG GAUAACUCA GUU ACgc cua  c
cuaua   ----        uccuC    U         C   -    u   ca 


Annotation confidence Not enough data
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Genome context
GL015416.1: 64657-64757 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from sko-mir-4818d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-4818d

Accession MIMAT0020013
Description Saccoglossus kowalevskii sko-miR-4818d mature miRNA
Sequence 61 - CAUUGCACUCAAUAGUGGGGC - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27