Stem-loop gma-MIR2118b

Accession

MI0017850

Description

Glycine max gma-MIR2118b precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

14 open access papers mention gma-MIR2118b
(42 sentences)

Sequence

ugaggaagugaugGGAGAUGGGAGGGUCGGUAAAGgauaacagcgucucuaugauuaauuguuguguuguuuauucuuUUGCCGAUUCCACCCAUUCCUaugauuuucuu
.((((((((.(((((((.((((.((((((((((((((.(((((((.(..((........))..))))))))...))))))))))).))).))))))))))).))))))))

Structure

u        g       A    A   -           --u       u uc  uga 
 gaggaagu augGGAG UGGG GGG UCGGUAAAGga   aacagcg c  ua   u
 |||||||| ||||||| |||| ||| |||||||||||   ||||||| |  ||    
 uucuuuua uaUCCUU ACCC CCU AGCCGUUuucu   uuguugu g  gu   u
-        g       -    A   U           uau       - uu  uaa 

Annotation confidence Not enough data

Genome context

chr10: 49169712-49169821 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR2118b

Mature gma-miR2118b-3p

• Accession: MIMAT0021000
• Description: Glycine max gma-miR2118b-3p mature miRNA
• Sequence: 79 - UUGCCGAUUCCACCCAUUCCU - 99
• Evidence: experimental ; 454 [1], Illumina [2-4]

Mature gma-miR2118b-5p

• Accession: MIMAT0022982
• Description: Glycine max gma-miR2118b-5p mature miRNA
• Sequence: 14 - GGAGAUGGGAGGGUCGGUAAAG - 35
• Evidence: experimental ; Illumina [3-4]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


3. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


4. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153