Stem-loop osa-MIR5077

Accession

MI0017965

Description

Oryza sativa osa-MIR5077 precursor miRNA

Literature search

2 open access papers mention osa-MIR5077
(2 sentences)

Sequence

ugccuuuucguuGUUCGCGUCGGGUUCACCAgcuaggugguucgccaugaaguacaggaagggggucgccggcgaguccaacgaugacgac
.......((((((..(.((((((((((.((..((..(((.(((.....))).))).))..))))).).)))))).)..)))))).......

Structure

ugccuuu      UU G      - -   A  Ag  ag   g   g 
       ucguuG  C CGUCGG G UUC CC  cu  gug uuc c
       ||||||  | |||||| | ||| ||  ||  ||| ||| c
       agcaac  g gcggcc c ggg gg  gg  cau aag a
cagcagu      cu a      g u   -  aa  -a   g   u 

Annotation confidence Low

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

Chr3: 14094752-14094842 [+]

Mature osa-miR5077

• Accession: MIMAT0020574
• Description: Oryza sativa osa-miR5077 mature miRNA
• Sequence: 13 - GUUCGCGUCGGGUUCACCA - 31
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129