Stem-loop bdi-MIR395a

Accession

MI0018081

Description

Brachypodium distachyon bdi-MIR395a precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention bdi-MIR395a
(36 sentences)

Sequence

caggagaugaaugguugguugucaacuggaguucuccucaaaucacuucaguagcuagcuagcuagcuugugccucauuguuucauugccgcuguuuauaagugugcauggagcuggagagccgugcacagUGAAGUGUUUGGGGGAACUCcggguggcaaccaacaauacugauaucacc
..((.((((....(((((((((((.((((((((((((.((((.(((((((..((((((....))))))((((((((...(((((((.((((((.......)))).)))))))))....)))....))))).))))))))))))))))))))))).)))))))))))........)))).))

Structure

ca  a    ----aaug           a            u    u       guagcuagcuagcuagcu     ----   -auu       u  -    gu 
  gg gaug        guugguuguca cuggaguucucc caaa cacuuca                  ugugc    cuc    guuucau gc cgcu  u
  || ||||        ||||||||||| |||||||||||| |||| |||||||                  |||||    |||    ||||||| || ||||  u
  cc cuau        caaccaacggu ggcCUCAAGGGG GUUU GUGAAGU                  acacg    gag    cgaggua cg guga  a
--  a    agucauaa           g            -    -       -----------------g     ugcc   aggu       -  u    au 

Annotation confidence Not enough data

Genome context

4: 16374432-16374612 [+]

Mature bdi-miR395a

• Accession: MIMAT0020656
• Description: Brachypodium distachyon bdi-miR395a mature miRNA
• Sequence: 132 - UGAAGUGUUUGGGGGAACUC - 151
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449