miRBase entry: 19772667

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response

PubMed ID 19772667
Authors Zhang J, Xu Y, Huan Q, Chong K
Journal BMC Genomics
Volume 10
Pages 449

There are 239 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
bdi-MIR395a MI0018081 None 4 16374432 16374612 + -
bdi-MIR528 MI0018087 None 1 73059536 73059695 - -
bdi-MIR395b MI0018088 None 1 55440558 55440678 - -
bdi-MIR168 MI0018098 None 3 1774700 1774835 - -
bdi-MIR396a MI0018111 None 3 59349783 59349991 - -
bdi-MIR394 MI0018115 None 3 52316372 52316571 - -
bdi-MIR164a MI0018118 None 2 19949322 19949514 - -
bdi-MIR393a MI0018119 None 2 2001005 2001163 - -
bdi-MIR395c MI0018127 None 5 25455997 25456122 + -
bdi-MIR827 MI0018128 None 5 18037481 18037644 - -
bdi-MIR5165 MI0018132 None 4 33186148 33186396 - -
bdi-MIR319a MI0018137 None 4 31253293 31253572 + -
bdi-MIR5176 MI0018145 None 1 28306160 28306307 - -
bdi-MIR162 MI0018213 None 3 49592002 49592134 + -
bdi-MIR164e MI0018215 None 2 26808982 26809108 - -
bdi-MIR164f MI0018216 None 2 19949341 19949501 + -
bdi-MIR395m MI0018219 None 1 55440156 55440250 - -
bdi-MIR395e MI0018220 None 5 25455195 25455344 + -
bdi-MIR395f MI0018221 None 5 25455426 25455521 + -
bdi-MIR395g MI0018222 None 5 25455723 25455811 + -
bdi-MIR395h MI0018223 None 5 25455882 25455957 + -
bdi-MIR395j MI0018224 None 5 25456151 25456238 + -
bdi-MIR395k MI0018225 None 5 25456290 25456375 + -
bdi-MIR395l MI0018226 None 5 25456562 25456657 + -
bdi-MIR395n MI0018227 None 5 25457116 25457205 + -
bdi-MIR529 MI0018229 None 3 44898509 44898615 + -
bdi-MIR5198 MI0018230 None 1 3141686 3141778 + -
bdi-MIR5199 MI0018231 None 1 42791417 42791560 - -
bdi-MIR5200c MI0018232 None 1 47483433 47483519 - -
bdi-MIR5201 MI0018233 None 2 42461428 42461517 - -
bdi-MIR5202 MI0018234 None 1 28904144 28904243 - -
bdi-MIR5181d MI0018235 None 3 14779421 14779487 - -
bdi-MIR319b MI0018236 None 2 45992390 45992579 - -
bdi-MIR390b MI0018217 None None None -
bdi-MIR396f MI0018237 None None None -
bdi-MIR398c MI0018228 None None None -
bdi-MIR164d MI0018214 None None None -
bdi-MIR395i MI0018218 None None None -
osa-MIR156a MI0000653 257272 Chr1 22524147 22524246 - -
osa-MIR156b MI0000654 258339 Chr1 4666341 4666516 + High
osa-MIR156c MI0000655 258287 Chr1 4665975 4666123 + High
osa-MIR156d MI0000656 375099 Chr2 4512884 4513012 - -
osa-MIR156e MI0000657 257257 Chr4 25026327 25026430 - -
osa-MIR156f MI0000658 374943 Chr8 21478230 21478415 + High
osa-MIR156g MI0000659 258296 Chr9 15065253 15065368 + High
osa-MIR156h MI0000660 374943 Chr8 21491232 21491417 + High
osa-MIR156i MI0000661 257274 Chr2 24119995 24120084 - -
osa-MIR156j MI0000662 374978 Chr6 26554795 26554959 + High
osa-MIR160a MI0000663 392 Chr2 3511585 3511672 - High
osa-MIR160b MI0000664 392 Chr6 28081020 28081158 + High
osa-MIR160c MI0000665 321 Chr8 1707568 1707666 + High
osa-MIR160d MI0000666 299 Chr3 32454988 32455129 + -
osa-MIR162a MI0000667 361 Chr2 23605799 23605969 + -
osa-MIR164a MI0000668 1892 Chr7 28523341 28523496 - -
osa-MIR164b MI0000669 1921 Chr5 15896163 15896271 - -
osa-MIR166a MI0000670 19323 Chr10 19987135 19987279 + High
osa-MIR166b MI0000671 19371 Chr6 30327084 30327289 - High
osa-MIR166c MI0000672 19151 Chr3 3487788 3487912 + High
osa-MIR166d MI0000673 19377 Chr2 26130059 26130183 + High
osa-MIR166e MI0000674 36 Chr3 765724 765860 + -
osa-MIR166f MI0000675 19281 Chr10 14483290 14483396 - -
osa-MIR167a MI0000676 55831 Chr12 25476808 25476948 + High
osa-MIR167b MI0000677 55818 Chr3 30546928 30547090 - -
osa-MIR167c MI0000678 55830 Chr3 33130619 33130781 + -
osa-MIR169a MI0000679 3953 Chr1 8729104 8729276 + -
osa-MIR171a MI0000680 7 Chr6 25891132 25891227 + -
osa-MIR393a MI0001026 98 Chr1 2309149 2309263 - -
osa-MIR394 MI0001027 78 Chr2 27148154 27148263 + -
osa-MIR395b MI0001028 31 Chr4 31805334 31805419 - -
osa-MIR395d MI0001029 22 Chr4 31805055 31805142 - -
osa-MIR395e MI0001030 20 Chr4 31804912 31804999 - -
osa-MIR395g MI0001031 19 Chr4 31804633 31804718 - -
osa-MIR395h MI0001032 20 Chr8 3299144 3299255 + -
osa-MIR395i MI0001033 19 Chr8 3299319 3299417 + -
osa-MIR395j MI0001034 20 Chr8 3299479 3299590 + -
osa-MIR395k MI0001035 19 Chr8 3299652 3299750 + -
osa-MIR395l MI0001036 17 Chr8 3299997 3300090 + -
osa-MIR395s MI0001037 22 Chr4 32622943 32623028 + -
osa-MIR395t MI0001038 0 Chr9 6607353 6607495 - -
osa-MIR395c MI0001041 10 Chr4 31805193 31805281 - -
osa-MIR395a MI0001042 0 Chr4 31805494 31805635 - -
osa-MIR395f MI0001043 0 Chr4 31804774 31804855 - -
osa-MIR395u MI0001044 0 Chr9 6606701 6606786 - -
osa-MIR396a MI0001046 97 Chr2 34280384 34280537 + -
osa-MIR396b MI0001047 100 Chr6 3669649 3669764 + -
osa-MIR396c MI0001048 280 Chr2 34287873 34288013 - High
osa-MIR397a MI0001049 361 Chr6 28489785 28489898 + -
osa-MIR397b MI0001050 315 Chr2 3280781 3280898 - -
osa-MIR398a MI0001051 11 Chr10 9216250 9216364 - -
osa-MIR398b MI0001052 59 Chr7 14598617 14598704 - -
osa-MIR156k MI0001090 871 Chr9 18289107 18289212 - -
osa-MIR156l MI0001091 10220 Chr5 5230609 5230764 + High
osa-MIR319a MI0001098 527 Chr1 26823282 26823472 - -
osa-MIR319b MI0001099 227 Chr1 6677570 6677766 - -
osa-MIR160e MI0001100 284 Chr7 2216761 2216874 - -
osa-MIR160f MI0001101 73 Chr8 24396882 24396981 + -
osa-MIR162b MI0001102 47 Chr4 24405899 24406032 + -
osa-MIR164c MI0001103 8 Chr5 17327440 17327558 + -
osa-MIR164d MI0001104 2213 Chr2 33143567 33143660 - -
osa-MIR164e MI0001105 1894 Chr3 10542157 10542288 + -
osa-MIR166k MI0001107 1477 Chr2 32435003 32435129 - High
osa-MIR166l MI0001108 1522 Chr9 16951817 16951933 + High
osa-MIR167d MI0001109 56522 Chr7 4166295 4166404 - -
osa-MIR167e MI0001110 56102 Chr2 3742241 3742513 - High
osa-MIR167f MI0001111 56422 Chr10 14723044 14723156 - -
osa-MIR167g MI0001112 56505 Chr3 3347682 3347763 + High
osa-MIR167h MI0001113 56418 Chr12 25480618 25480737 + -
osa-MIR167i MI0001114 56192 Chr6 27674749 27674949 + High
osa-MIR168a MI0001115 282915 Chr2 1553154 1553240 - High
osa-MIR168b MI0001116 1 Chr2 27336428 27336533 + -
osa-MIR169b MI0001117 3267 Chr6 27295908 27296035 - -
osa-MIR169c MI0001118 3454 Chr4 30712338 30712449 - -
osa-MIR169d MI0001119 1 Chr9 14620382 14620484 - -
osa-MIR169e MI0001120 804 Chr2 31205866 31205997 - -
osa-MIR169f MI0001121 845 Chr2 18558299 18558512 - -
osa-MIR169g MI0001122 1008 Chr4 19420077 19420202 + -
osa-MIR169h MI0001123 1003 Chr8 26807349 26807470 + -
osa-MIR169i MI0001124 1053 Chr8 26803116 26803291 + High
osa-MIR169j MI0001125 1011 Chr9 19788861 19788985 + -
osa-MIR169k MI0001126 1016 Chr9 19792133 19792288 + -
osa-MIR169l MI0001127 1003 Chr8 26817488 26817595 + -
osa-MIR169m MI0001128 1012 Chr8 26813897 26814034 + -
osa-MIR169n MI0001129 82 Chr11 6085252 6085428 - -
osa-MIR169o MI0001130 82 Chr11 6081528 6081700 - -
osa-MIR169p MI0001131 0 Chr8 7641327 7641452 - -
osa-MIR169q MI0001132 None Chr8 26817488 26817595 - -
osa-MIR171b MI0001133 363 Chr8 5369153 5369252 + -
osa-MIR171c MI0001134 391 Chr4 31713472 31713570 - High
osa-MIR171d MI0001135 369 Chr10 21237313 21237447 + High
osa-MIR171e MI0001136 369 Chr3 1970487 1970605 + High
osa-MIR171f MI0001137 354 Chr3 30027774 30027900 + -
osa-MIR171g MI0001138 9 Chr7 15636744 15636832 - -
osa-MIR172a MI0001139 3477 Chr9 22881834 22881942 + -
osa-MIR172b MI0001140 201 Chr1 42923736 42923973 - -
osa-MIR172c MI0001141 199 Chr7 13111485 13111595 - -
osa-MIR166g MI0001142 19256 Chr12 18329367 18329511 + -
osa-MIR166h MI0001143 17849 Chr2 32435174 32435292 - High
osa-MIR166i MI0001144 443 Chr3 25294953 25295097 + -
osa-MIR171h MI0001147 61 Chr4 28482456 28482556 + -
osa-MIR393b MI0001148 216 Chr4 34931876 34932007 - High
osa-MIR172d MI0001154 3505 Chr2 35143537 35143666 - High
osa-MIR171i MI0001155 92 Chr3 21191603 21191722 + High
osa-MIR167j MI0001156 56523 Chr1 32686068 32686227 - -
osa-MIR166m MI0001157 17946 Chr8 23045356 23045555 + -
osa-MIR166j MI0001158 19511 None None -
osa-MIR164f MI0001159 1904 Chr5 23343908 23344117 + -
osa-MIR390 MI0001690 337 Chr3 34275140 34275230 - High
osa-MIR396e MI0001703 1338 Chr4 34436820 34437003 + High
osa-MIR528 MI0003201 4611 Chr3 1667328 1667415 + -
osa-MIR529a MI0003202 331 Chr2 16227805 16227903 + -
osa-MIR395m MI0005084 17 Chr4 32621993 32622112 + -
osa-MIR395n MI0005085 33 Chr4 32622243 32622308 + -
osa-MIR395o MI0005086 1 Chr4 32622381 32622449 + -
osa-MIR395p MI0005087 21 Chr4 32622525 32622592 + -
osa-MIR395q MI0005088 21 Chr4 32622668 32622735 + -
osa-MIR395v MI0005090 1 Chr9 6606575 6606643 - -
osa-MIR395w MI0005091 0 Chr9 6606291 6606359 - -
osa-MIR395r MI0005092 17 None None -
osa-MIR529b MI0005804 306 Chr4 15883024 15883161 + -
osa-MIR169r MI0006973 69 Chr3 35782416 35782544 + High
osa-MIR827 MI0010490 478 None None -
osa-MIR396f MI0010563 1410 Chr2 35636546 35636721 - High
bdi-MIR171a MI0011559 None 3 52059037 52059156 - -
bdi-MIR167a MI0011561 None 1 6349045 6349135 + -
bdi-MIR397a MI0011565 None 3 3149697 3149820 - -
bdi-MIR156a MI0011566 None 4 39473438 39473584 + -
bdi-MIR172d MI0011567 None 2 38183339 38183431 - -
bdi-MIR166a MI0011570 None 1 6574374 6574493 + -
bdi-MIR171c MI0011571 None 5 24711141 24711226 - -
bdi-MIR169b MI0011574 None 1 27159120 27159225 - -
osa-MIR396g MI0013047 1122 Chr6 5300630 5300810 - -
osa-MIR396h MI0013048 1122 Chr2 32841661 32841801 + -
osa-MIR396d MI0013049 1542 None None -
osa-MIR395x MI0013350 1 Chr4 32623067 32623162 + -
osa-MIR395y MI0013351 25 Chr8 3299815 3299924 + -
bdi-MIR169d MI0018079 None 4 26242409 26242595 + -
bdi-MIR169i MI0018080 None 4 44509037 44509211 + -
bdi-MIR169j MI0018082 None 4 44513754 44513936 + -
bdi-MIR166f MI0018083 None 4 6090867 6091011 - -
bdi-MIR171b MI0018084 None 1 6911133 6911296 + -
bdi-MIR390a MI0018085 None 1 2722067 2722275 + -
bdi-MIR160a MI0018086 None 1 4550703 4550877 - -
bdi-MIR166d MI0018089 None 1 71419377 71419541 - -
bdi-MIR167b MI0018091 None 1 3770002 3770191 + -
bdi-MIR166b MI0018092 None 1 30655617 30655860 - -
bdi-MIR160b MI0018093 None 1 28020411 28020556 - -
bdi-MIR164b MI0018094 None 1 14544140 14544348 + -
bdi-MIR167c MI0018095 None 1 54067075 54067233 + -
bdi-MIR396d MI0018096 None 1 46677004 46677155 - -
bdi-MIR169k MI0018097 None 1 1175425 1175598 + -
bdi-MIR160c MI0018100 None 3 3414575 3414722 - -
bdi-MIR396c MI0018101 None 3 54968138 54968290 - -
bdi-MIR167d MI0018102 None 3 3632405 3632608 - -
bdi-MIR156b MI0018104 None 3 39258110 39258314 - -
bdi-MIR169g MI0018105 None 3 43444486 43444666 + -
bdi-MIR160d MI0018106 None 3 12734293 12734442 + -
bdi-MIR160e MI0018107 None 3 41554285 41554428 + -
bdi-MIR396e MI0018108 None 3 54962836 54963036 + -
bdi-MIR156c MI0018109 None 3 4336022 4336167 - -
bdi-MIR172a MI0018110 None 3 55737301 55737453 - -
bdi-MIR166e MI0018112 None 3 51437868 51438018 + -
bdi-MIR166c MI0018113 None 3 33098767 33098938 + -
bdi-MIR169e MI0018114 None 3 43441526 43441689 + -
bdi-MIR398a MI0018116 None 2 35924413 35924562 - -
bdi-MIR172b MI0018121 None 2 58915755 58916008 - -
bdi-MIR156d MI0018122 None 5 18202182 18202332 - -
bdi-MIR393b MI0018123 None 5 27613816 27613989 + -
bdi-MIR169h MI0018124 None 5 11563834 11563997 - -
bdi-MIR396b MI0018125 None 5 27112463 27112651 + -
bdi-MIR169c MI0018126 None 5 23763870 23764020 - -
bdi-MIR166g MI0018135 None 4 37627843 37628050 + -
bdi-MIR395d MI0018147 None 3 14764296 14764443 - -
bdi-MIR398b MI0018150 None 3 21918225 21918387 + -
bdi-MIR164c MI0018152 None 3 59107074 59107211 - -
bdi-MIR169f MI0018160 None 3 16738806 16738956 + -
bdi-MIR171d MI0018090 None None None -
bdi-MIR169a MI0018120 None None None -
bdi-MIR397b MI0025288 None None None -
bdi-MIR156e MI0025290 None 2 4030451 4030583 + -
bdi-MIR156f MI0025291 None 2 4030679 4030788 + -
bdi-MIR156g MI0025292 None 2 4030916 4031026 + -
bdi-MIR156h MI0025293 None 3 49973597 49973704 - -
bdi-MIR156i MI0025294 None 4 36168961 36169114 + -
bdi-MIR166h MI0025296 None 3 57427334 57427473 + -
bdi-MIR166i MI0025297 None 3 27457696 27457817 - -
bdi-MIR167e MI0025298 None 4 1641440 1641565 - -
bdi-MIR395o MI0025299 None 1 55440734 55440819 - -
bdi-MIR395p MI0025300 None 5 25456430 25456518 + -
bdi-MIR156j MI0029151 None 4 38856201 38856309 - -
bdi-MIR160f MI0029153 None 5 19337418 19337548 - -
bdi-MIR166j MI0029154 None None None -
bdi-MIR167f MI0029155 None 4 1643731 1643832 - -
bdi-MIR167g MI0029156 None 1 71590930 71591103 - -
bdi-MIR169l MI0029157 None 4 35762160 35762251 - -
bdi-MIR169m MI0029158 None 3 58636718 58636827 + -
bdi-MIR169n MI0029159 None 1 11346973 11347080 - -
bdi-MIR171e MI0029160 None 1 30824648 30824742 - -
bdi-MIR171f MI0029161 None 5 21672257 21672347 + -
bdi-MIR395q MI0029162 None 5 25456843 25456926 + -



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