miRBase entry: bdi-MIR168

Stem-loop bdi-MIR168


Accession
MI0018098
Description
Brachypodium distachyon bdi-MIR168 precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
2 open access papers mention bdi-MIR168
(9 sentences)

Sequence

ugcuccuccccugccgccgccgccucgggcUCGCUUGGUGCAGAUCGGGACccuccgcccgcccccgccgggccggauCCCGCCUUGCACCAAGUGAAUcggagccggcgcagcgacuuuuuuuuacuuaauuccu
..............((((((((.(((.((.(((((((((((((..(((((...(((((((((....).)))).)))))))))..))))))))))))).)).))).)))))..))).....................

Structure
-------ugcuccuccccugc   --     c   g  c             AU     Ccc    -    - c 
                     cgc  cgccg cuc gg UCGCUUGGUGCAG  CGGGA   uccg cccg c c
                     |||  ||||| ||| || |||||||||||||  |||||   |||| |||| |  
                     gcg  gcggc gag cU AGUGAACCACGUU  GCCCu   aggc gggc g c
uccuuaauucauuuuuuuuca   ac     c   g  A             CC     ---    c    c c 


Annotation confidence Not enough data
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Genome context
3: 1774700-1774835 [-]

Database links

Mature bdi-miR168-5p

Accession MIMAT0020673
Description Brachypodium distachyon bdi-miR168-5p mature miRNA
Sequence 31 - UCGCUUGGUGCAGAUCGGGAC - 51
Evidence experimental
Illumina [1,3]

Mature bdi-miR168-3p

Accession MIMAT0027053
Description Brachypodium distachyon bdi-miR168-3p mature miRNA
Sequence 79 - CCCGCCUUGCACCAAGUGAAU - 99
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449

  3. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443