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miRBase |
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Stem-loop sequence bdi-MIR396a |
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Accession | MI0018111 (change log) | ||||
Description | Brachypodium distachyon miR396a stem-loop | ||||
Gene family | MIPF0000047; MIR396 | ||||
Literature search |
2 open access papers mention bdi-MIR396a | ||||
Stem-loop |
--- g -ucaauuac u cuc ca g ucgugcgccuagccugcuagcugcucaauucgaucugucauccu 5' gc cggc aggu gcggccaug ucca ggcuuucuugaacugu aac c || |||| |||| ||||||||| |||| |||||||||||||||| ||| 3' cg gucg uccg cgccgguac aggu cugaaagaacuuggua uug g auu - uccccuuuc c aaa uc g uuccguguaguauaguauauguucguuaagucuagcuuagcuug |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence bdi-miR396a-5p |
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Accession | MIMAT0020686 |
Sequence |
33 - uccacaggcuuucuugaacug - 53 |
Evidence | experimental; Illumina [1,3] |
Mature sequence bdi-miR396a-3p |
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Accession | MIMAT0027062 |
Sequence |
156 - guucaagaaaguccuuggaaa - 176 |
Evidence | experimental; Illumina [3] |
References |
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1 |
PMID:19772667
"Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
BMC Genomics. 10:449(2009).
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2 |
PMID:21371551
"Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
Genomics. 97:282-293(2011).
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3 |
PMID:23264558
"Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon"
Mol Plant. 6:423-443(2013).
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