Stem-loop bdi-MIR396a

Accession

MI0018111

Description

Brachypodium distachyon bdi-MIR396a precursor miRNA

Literature search

2 open access papers mention bdi-MIR396a
(5 sentences)

Sequence

gcgcggcucaauuacagguugcggccaugcucUCCACAGGCUUUCUUGAACUGugaacucgugcgccuagccugcuagcugcucaauucgaucugucauccucgguucgauucgaucugaauugcuuguauaugauaugaugugccuuguugaugGUUCAAGAAAGUCCUUGGAAAacauggccgccgccucuuuccccugcuggcuua
((.((((........((((.(((((((((...((((..((((((((((((((((.(((....(((.((((....)))).))).((((((((((.(((..(....)...)))..)))).))))))...((((((......))))))...))).))))))))))))))))..))))...))))))))).)))).........))))))...

Structure

---  g    -ucaauuac    u         cuc    CA                g   ucgugcgccuagccugcuagcugcu      -    -u   -au c 
   gc cggc         aggu gcggccaug   UCCA  GGCUUUCUUGAACUGu aac                         caauuc gauc  guc   c u
   || ||||         |||| |||||||||   ||||  |||||||||||||||| |||                         |||||| ||||  |||   |  
   cg gucg         uccg cgccgguac   AGGU  CUGAAAGAACUUGgua uug                         guuaag cuag  uag   g c
auu  -    uccccuuuc    c         aAA    UC                g   -uuccguguaguauaguauauguuc      u    cu   cuu g 

Annotation confidence Not enough data

Genome context

3: 59349783-59349991 [-]

Mature bdi-miR396a-5p

• Accession: MIMAT0020686
• Description: Brachypodium distachyon bdi-miR396a-5p mature miRNA
• Sequence: 33 - UCCACAGGCUUUCUUGAACUG - 53
• Evidence: experimental ; Illumina [1,3]

Mature bdi-miR396a-3p

• Accession: MIMAT0027062
• Description: Brachypodium distachyon bdi-miR396a-3p mature miRNA
• Sequence: 156 - GUUCAAGAAAGUCCUUGGAAA - 176
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


3. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443