Stem-loop sequence bdi-MIR164a

Accession

MI0018118 (change log)

Description

Brachypodium distachyon miR164a stem-loop

Gene family

MIPF0000045; MIR164

Literature search

4 open access papers mention bdi-MIR164a
(19 sentences)

Stem-loop

   ------gaguggacauaug         gc   a          c           auucguuccagcucgccgccggugugccgcgccgcggccugg 
5'                    aggcgaggc  gcg gguggagaag agggcacgugc                                          g
                      |||||||||  ||| |||||||||| |||||||||||                                          c
3'                    uccgcuccg  cgc ccaccucuuc ucccguguacg                                          g
   ccgcacgcgcgcgcaagcg         aa   g          u           uacgugugugugcgcguaccggccggcgagcccgcugugcgc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 2: 19949322-19949514 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR164a

• bdi-MIR164f: 2: 19949341-19949501 [+]
• bdi-MIR164a: 2: 19949322-19949514 [-]

Database links

• miRBase Tracker:MI0018118

Mature sequence bdi-miR164a-5p

• Accession: MIMAT0020693
• Sequence: 31 - uggagaagcagggcacgugca - 51
• Evidence: experimental; Illumina [1,3]

Mature sequence bdi-miR164a-3p

• Accession: MIMAT0027067
• Sequence: 139 - caugugcccuucuucuccacc - 159
• Evidence: experimental; Illumina [3]

References

1. PMID:19772667 "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response" Zhang J, Xu Y, Huan Q, Chong K BMC Genomics. 10:449(2009).
2. PMID:21371551 "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs" Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Genomics. 97:282-293(2011).
3. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).