miRBase entry: bdi-MIR396b

Stem-loop bdi-MIR396b


Accession
MI0018125
Description
Brachypodium distachyon bdi-MIR396b precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
2 open access papers mention bdi-MIR396b
(4 sentences)

Sequence

ggaguaguaaaagagaugcgcgggcaugcuuUCCACAGGCUUUCUUGAACUGugaacucguggggguguucuccucugaauugugucguggaauugcgggcuuguucuuuauccgucgaucucuccgccuguugaugGUUCAAGAAAGCCCAUGGAAAccaugccgccaucuuggucucgcguccccgu
(((...(..(..((((((.((((.((((.((((((..((((((((((((((((.(((..(((((((.((((......))))...((((((((...(((....)))......)))).)))).)))))))..))).))))))))))))))))..)))))).))))))))))))))..)..)...)))....

Structure
----   gua ua aa      c    g    c      CA                g   uc       uguucuccucugaauugu    -    ---auu   g 
    gga   g  a  gagaug gcgg caug uuUCCA  GGCUUUCUUGAACUGu aac  guggggg                  gucg ugga      gcg g
    |||   |  |  |||||| |||| |||| ||||||  |||||||||||||||| |||  |||||||                  |||| ||||      |||  
    ccu   c  u  uucuac cgcc guac AAAGGU  CCGAAAGAACUUGgua uug  cgccucu                  uagc gccu      ugu c
ugcc   gcg uc gg      -    -    c      AC                g   uc       -----------------c    u    auuucu   u 


Annotation confidence Not enough data
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Genome context
5: 27112463-27112651 [+]

Database links

Mature bdi-miR396b-5p

Accession MIMAT0020700
Description Brachypodium distachyon bdi-miR396b-5p mature miRNA
Sequence 32 - UCCACAGGCUUUCUUGAACUG - 52
Evidence experimental
Illumina [2]

Mature bdi-miR396b-3p

Accession MIMAT0027072
Description Brachypodium distachyon bdi-miR396b-3p mature miRNA
Sequence 138 - GUUCAAGAAAGCCCAUGGAAA - 158
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443