Stem-loop sequence bdi-MIR395j

Accession

MI0018224 (change log)

Description

Brachypodium distachyon miR395j stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention bdi-MIR395j
(32 sentences)

Stem-loop

      auuc   u         g             -a    g  u 
5' ggu    uca gaguuuccc caagcacuucacg  ggcc uu u
   |||    ||| ||||||||| |||||||||||||  |||| ||  
3' cca    ggu cucaagggg guuugugaagugu  ucgg ag c
      cucu   u         -             ca    g  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 5: 25456151-25456238 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR395j

• bdi-MIR395e: 5: 25455195-25455344 [+]
• bdi-MIR395f: 5: 25455426-25455521 [+]
• bdi-MIR395g: 5: 25455723-25455811 [+]
• bdi-MIR395h: 5: 25455882-25455957 [+]
• bdi-MIR395c: 5: 25455997-25456122 [+]
• bdi-MIR395j: 5: 25456151-25456238 [+]
• bdi-MIR395k: 5: 25456290-25456375 [+]
• bdi-MIR395p: 5: 25456430-25456518 [+]
• bdi-MIR395l: 5: 25456562-25456657 [+]
• bdi-MIR395q: 5: 25456843-25456926 [+]
• bdi-MIR395n: 5: 25457116-25457205 [+]

Database links

• miRBase Tracker:MI0018224

Mature sequence bdi-miR395j-5p

• Accession: MIMAT0027093
• Sequence: 14 - guuucccgcaagcacuucacg - 34
• Evidence: experimental; Illumina [2]

Mature sequence bdi-miR395j-3p

• Accession: MIMAT0020749
• Sequence: 58 - ugaaguguuugggggaacuc - 77
• Evidence: experimental; Illumina [1-2]

References

1. PMID:19772667 "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response" Zhang J, Xu Y, Huan Q, Chong K BMC Genomics. 10:449(2009).
2. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).