Stem-loop bdi-MIR395l

Accession

MI0018226

Description

Brachypodium distachyon bdi-MIR395l precursor miRNA

Literature search

3 open access papers mention bdi-MIR395l
(31 sentences)

Sequence

guuugguauuaucaugaGUUCCCUGCAAGCACUUCACGaggcacuaucccaagggcuacugUGAAGUGUUUGGGGGAACUCuuggugucaccaagc
(((((((..(((((.(((((((((.(((((((((((((.(((.((......)).)))..)))))))))))))))))))))).)))))..)))))))

Structure

       au     u         G             -a   a  au 
guuuggu  uauca gaGUUCCCU CAAGCACUUCACG  ggc cu  c
|||||||  ||||| ||||||||| |||||||||||||  ||| ||   
cgaacca  guggu CUCAAGGGG GUUUGUGAAGUgu  ucg ga  c
       cu     u         -             ca   g  ac 

Annotation confidence Not enough data

Genome context

5: 25456562-25456657 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from bdi-MIR395l

Mature bdi-miR395l-3p

• Accession: MIMAT0020751
• Description: Brachypodium distachyon bdi-miR395l-3p mature miRNA
• Sequence: 62 - UGAAGUGUUUGGGGGAACUC - 81
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR395l-5p

• Accession: MIMAT0027095
• Description: Brachypodium distachyon bdi-miR395l-5p mature miRNA
• Sequence: 18 - GUUCCCUGCAAGCACUUCACG - 38
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443