miRBase entry: mtr-MIR2592aj

Stem-loop mtr-MIR2592aj


Accession
MI0018272
Description
Medicago truncatula mtr-MIR2592aj precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592aj
(2 sentences)

Sequence

caguuggaaugugcauuucaaccacaacaauuguguuaccuuugaaugggauaaauucaaaaaaCAACAGGACUCAAGCAUUUCGCcaagcacuucauguuuucccuuugaaaagaauaaauuuuugucaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaagaauuuaauauuuucaaaggagaaacaugaggcgcuugcgaaaugcucgaguccuguuguucgacaaguuugaauuaccccauucaaaggaagacaauuguuguaguuggaaugcaccuuacccuaa
.....((((.((((((((((((.(((((((((((.((.((((((((((((...((((((((.(((((((((((((.((((((((((.((((.(((((((((((.((((((((((...(((((((((((...(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).)))...)))))))))))...)))))))))).))))))))))).)))))))))))))).))))))))))))).......))))))))..)))))))))))))).))))))))))).)))))))))))).)).))....

Structure
caguu  -  u            c           g  a            aua        ------a             A          c    a           c          gaa           cag   u c         u      c     c  cc  a    g 
     gg aa gugcauuucaac acaacaauugu uu ccuuugaauggg   aauucaaa       aaCAACAGGACUC AGCAUUUCGC aagc cuucauguuuu ccuuugaaaa   uaaauuuuugu   gcu g uuuagauga gguauu aagug ca  ga uuga  
     || || |||||||||||| ||||||||||| || ||||||||||||   ||||||||       ||||||||||||| |||||||||| |||| ||||||||||| ||||||||||   |||||||||||   ||| | ||||||||| |||||| ||||| ||  || |||| g
     cc uu cacguaagguug uguuguuaaca aa ggaaacuuaccc   uuaaguuu       uuguuguccugag ucguaaagcg uucg ggaguacaaag ggaaacuuuu   auuuaagaaca   cga c aaaucuacu ccauaa uucac gu  cu aacu  
-aauc  a  c            a           g  -            -ca        gaacagc             c          -    c           a          aua           aua   c -         u      -     a  uc  -    u 


Annotation confidence Not enough data
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Genome context
chr6: 1617098-1617442 [+]

Database links

Mature mtr-miR2592aj

Accession MIMAT0021166
Description Medicago truncatula mtr-miR2592aj mature miRNA
Sequence 65 - CAACAGGACUCAAGCAUUUCGC - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010