miRBase entry: mtr-MIR172c

Stem-loop mtr-MIR172c


Accession
MI0018369
Description
Medicago truncatula mtr-MIR172c precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
7 open access papers mention mtr-MIR172c
(33 sentences)

Sequence

uauuugcagauGUAGCAUCAUCAAGAUUCACAuaugaaagugcaaaugguuuuguuggauuuugaucugaucgaugcaaaucuaaguucuccauaggucuuuugaacugAGAAUCUUGAUGAUGCUGCAUcagccauaa
.....((.(((((((((((((((((((((.((...(((((.((..((((.....((((((((..(((.....)))..)))))))).....))))..)))))))....)).))))))))))))))))))))).)).....

Structure
uauuu  a                     A  -uau     u  aa    uuuug        ug   u 
     gc gauGUAGCAUCAUCAAGAUUC CA    gaaag gc  augg     uuggauuu  auc g
     || ||||||||||||||||||||| ||    ||||| ||  ||||     ||||||||  ||| a
     cg cUACGUCGUAGUAGUUCUAAG gu    uuuuc ug  uacc     aaucuaaa  uag u
aauac  a                     A  caag     -  ga    ucuug        cg   c 


Annotation confidence Not enough data
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Genome context
AC233663.2: 10169-10307 [+]

Database links

Mature mtr-miR172c-5p

Accession MIMAT0021265
Description Medicago truncatula mtr-miR172c-5p mature miRNA
Sequence 12 - GUAGCAUCAUCAAGAUUCACA - 32
Evidence experimental
Illumina [2]

Mature mtr-miR172c-3p

Accession MIMAT0021266
Description Medicago truncatula mtr-miR172c-3p mature miRNA
Sequence 110 - AGAAUCUUGAUGAUGCUGCAU - 130
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010

  2. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367

  3. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553