Stem-loop mtr-MIR159b

Accession

MI0018370

Description

Medicago truncatula mtr-MIR159b precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

2 open access papers mention mtr-MIR159b
(36 sentences)

Sequence

aaccuaauuuggggcucuccgcacuccaagucuaaaaggaggugauaguuuacccuugcugcuuguucaugguuaccuuugacuuugcacauuggaaacuuaccaaagucauggguuugcaugaauuuggagauaggguugccuugaucuuuuuguAUUGGAGUGAAGGGAGCUCCAaaauuggac
...((((((((((((((((..((((((((..(...((((((((.(..((..(((((..((.(..(((((((...((((.((((((((......(....)....)))))))).))))...)))))))..).))..))))).))..).)))))))))..))))))))..))))))))).)))))))..

Structure

aac       -         cg        gu uaa        g ua  uu     ug  g uu       guu    u        cacauu g 
   cuaauuu ggggcucuc  cacuccaa  c   aaggaggu a  gu  acccu  cu c  guucaug   accu ugacuuug      g a
   ||||||| |||||||||  ||||||||  |   |||||||| |  ||  |||||  || |  |||||||   |||| ||||||||      |  
   gguuaaa CCUCGAGGG  GUGAGGUU  g   uuuuucua u  cg  uggga  ga g  uaaguac   uggg acugaaac      c a
-ca       A         AA        Au ---        g uc  -u     ua  g uu       guu    u        --cauu a 

Annotation confidence Not enough data

Genome context

AC233577.5: 10385-10570 [-]

Mature mtr-miR159b

• Accession: MIMAT0021267
• Description: Medicago truncatula mtr-miR159b mature miRNA
• Sequence: 157 - AUUGGAGUGAAGGGAGCUCCA - 177
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553