Stem-loop sequence gma-MIR171j

AccessionMI0018641 (change log)
DescriptionGlycine max miR171j stem-loop
Gene family MIPF0000030; MIR171_1
Literature search

15 open access papers mention gma-MIR171j
(37 sentences)

Stem-loop 
             u    u         c       c      auguau       -    -gu     cc   --c    a 
5' augaaguagu auug gauauuggc ugguuca ucagac      accacgg cacg   ugugu  uug   uaga a
   |||||||||| |||| ||||||||| ||||||| ||||||      ||||||| ||||   |||||  |||   ||||  
3' uacuuuaucg ugac cuauaaccg gccgagu aguuug      ugguguu gugu   acaua  aac   auuu g
             -    u         u       u      -gguuu       a    ugu     -a   aaa    a
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Glycine_max_v2.0; GCA_000004515.3) Overlapping transcripts
chr2: 4065759-4065911 [-]
intergenic
Database links

Mature sequence gma-miR171j-5p

Accession MIMAT0021623
Previous IDsgma-miR171j
Sequence

19 -  

uauuggccugguucacucaga

 - 39

Get sequence
Evidence experimental; Illumina [1]

Mature sequence gma-miR171j-3p

Accession MIMAT0022990
Sequence

118 -  

ugauugagccgugccaauauc

 - 138

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses" Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R BMC Genomics. 12:307(2011).
2
PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).