Stem-loop gma-MIR171j

Accession

MI0018641

Description

Glycine max gma-MIR171j precursor miRNA

Literature search

15 open access papers mention gma-MIR171j
(37 sentences)

Sequence

augaaguaguuauugugaUAUUGGCCUGGUUCACUCAGAcauguauaccacggcacgguuguguccuugcuagaaagauuuaaaacaaaauacauguugugauugugguuuuggguuUGAUUGAGCCGUGCCAAUAUCucagugcuauuucau
((((((((((.((((.(((((((((.(((((((.((((((......((((((((((((.(((((..(((.((((....))))...))).)))))..))))).))))))).....)))))).))))))).))))))))).))))))))))))))

Structure

          u    u         C       C      auguau       -     -u     cc   --c    a 
augaaguagu auug gaUAUUGGC UGGUUCA UCAGAc      accacgg cacgg  ugugu  uug   uaga a
|||||||||| |||| ||||||||| ||||||| ||||||      ||||||| |||||  |||||  |||   ||||  
uacuuuaucg ugac CUAUAACCG GCCGAGU AGUuug      ugguguu guguu  acaua  aac   auuu g
          -    u         U       U      -gguuu       a     gu     -a   aaa    a 

Annotation confidence Low

Genome context

chr2: 4065759-4065911 [-]

Mature gma-miR171j-5p

• Accession: MIMAT0021623
• Description: Glycine max gma-miR171j-5p mature miRNA
• Sequence: 19 - UAUUGGCCUGGUUCACUCAGA - 39
• Evidence: experimental ; Illumina [1]

Mature gma-miR171j-3p

• Accession: MIMAT0022990
• Description: Glycine max gma-miR171j-3p mature miRNA
• Sequence: 118 - UGAUUGAGCCGUGCCAAUAUC - 138
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553