miRBase entry: aca-mir-98

Stem-loop aca-mir-98

Accession

MI0018893

Description

Anolis carolinensis aca-mir-98 precursor miRNA

Gene family

MIPF0000002; let-7

Sequence

ccauuuacuucuguuggggUGAGGUAGUAAGUUGUAUUGUugugggguagggauuugugccccaaaucagagauaacUAUACAACUUACUACUUUCCcuaacugggg
.......((((.(((((((.(((((((((((((((((.(((((((((((........))))))).........)))).)))))))))))))))))))))))).))))

Structure

ccauuua    u       U                 U    ---------       ggg 
       cuuc guugggg GAGGUAGUAAGUUGUAU GUug         uggggua   a
       |||| ||||||| ||||||||||||||||| ||||         |||||||    
       gggg caaucCC UUUCAUCAUUCAACAUA caau         accccgu   u
-------    u       -                 U    agagacuaa       guu

Annotation confidence Not enough data

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Genome context

chr1: 205025683-205025789 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-98

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-98-5p

Accession	MIMAT0021994
Description	Anolis carolinensis aca-miR-98-5p mature miRNA
Sequence	20 - UGAGGUAGUAAGUUGUAUUGU - 40
Evidence	experimental Illumina [1]

Mature aca-miR-98-3p

Accession	MIMAT0021995
Description	Anolis carolinensis aca-miR-98-3p mature miRNA
Sequence	78 - UAUACAACUUACUACUUUCC - 97
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107