Stem-loop osa-MIR2275c

Accession

MI0019032

Description

Oryza sativa osa-MIR2275c precursor miRNA

Literature search

14 open access papers mention osa-MIR2275c
(65 sentences)

Sequence

8434 reads, 65.0 reads per million, 69 experiments

acuggaagugAGAAUUGGAGGAAAACAAACUGAuugcugguugaugcuugcaacaguguggcaaacaauuaauauucagaUUGUUUUUCUCCAAUAUCUCaccuucagg
.(((((.(((((((((((((((((((((.((((.((.((((((.((((.((....))..))))..)))))).)).)))).))))))))))))))).)))))).))))).

Structure

a     a      -               A    u  c      -a    -u  a 
 cugga gugAGA AUUGGAGGAAAACAA CUGA ug ugguug  ugcu  gc a
 ||||| |||||| ||||||||||||||| |||| || ||||||  ||||  ||  
 gacuu caCUCU UAACCUCUUUUUGUU gacu au auuaac  acgg  ug c
g     c      A               a    u  a      aa    ug  a 

Annotation confidence High

Genome context

7: 16719772-16719880 [-]

Mature osa-miR2275c-5p

• Accession: MIMAT0022147
• Description: Oryza sativa osa-miR2275c-5p mature miRNA
• Sequence: 11 - AGAAUUGGAGGAAAACAAACUGA - 33
• Evidence: experimental ; Illumina [1]

Mature osa-miR2275c-3p

• Accession: MIMAT0056227
• Description: Oryza sativa osa-miR2275c-3p mature miRNA
• Sequence: 81 - UUGUUUUUCUCCAAUAUCUC - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53