Stem-loop sequence osa-MIR5515

Accession MI0019034
Description Oryza sativa miR5515 stem-loop
Stem-loop 
aa       ggu   g   gg   a      -  -   uaauuggaaugagagacuucgggagu 
  auuguuu   uca uug  gag cgauca cg ccu                          u
  |||||||   ||| |||  ||| |||||| || |||                           
  uaacaaa   agu gac  cuu guuggu gc ggg                          u
ug       ---   g   au   -      a  c   uaaacccacagguuuaucuuauugau
Get sequence
Genome context
Coordinates (MSU7) Overlapping transcripts
Chr4: 17244138-17244261 [+]
intergenic
Clustered miRNAs
< 10kb from osa-MIR5515
osa-MIR5499 Chr4: 17241717-17241841 [+]
osa-MIR5515 Chr4: 17244138-17244261 [+]

Mature sequence osa-miR5515

Accession MIMAT0022149
Sequence

94 -  

ccgaugguuguucuacaggug

 - 114

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).