Stem-loop sequence osa-MIR5522

Accession MI0019041
Description Oryza sativa miR5522 stem-loop
Gene family MIPF0000745; MIR2118
Stem-loop 
agcac      a aa            g   -u        u      caaguc    ca 
     cuaaga c  uaggaaugggag cau  aggaaagu gcaagc      ucca  a
     |||||| |  |||||||||||| |||  |||||||| ||||||      ||||   
     gauucu g  auccuuacccuu gua  uccuuuca cguucg      aggu  a
uccca      c ac            -   cc        -      ------    ac
Get sequence
Deep sequencing
618 reads, 2 experiments
Genome context
Coordinates (MSU7) Overlapping transcripts
Chr4: 21650324-21650436 [+]
intergenic
Clustered miRNAs
< 10kb from osa-MIR5522
osa-MIR2118a Chr4: 21642923-21643101 [-]
osa-MIR1869 Chr4: 21644852-21644989 [+]
osa-MIR2118b Chr4: 21645285-21645463 [-]
osa-MIR2118e Chr4: 21647428-21647604 [-]
osa-MIR2118d Chr4: 21647689-21647864 [-]
osa-MIR2118c Chr4: 21647968-21648064 [-]
osa-MIR2118g Chr4: 21650301-21650460 [-]
osa-MIR5522 Chr4: 21650324-21650436 [+]
osa-MIR2118f Chr4: 21650514-21650682 [-]
osa-MIR2118i Chr4: 21652388-21652568 [-]
osa-MIR2118h Chr4: 21652652-21652808 [-]
osa-MIR2118j Chr4: 21654594-21654764 [-]
osa-MIR2118l Chr4: 21656708-21656884 [-]
osa-MIR2118k Chr4: 21656944-21657120 [-]
osa-MIR2118m Chr4: 21658851-21659020 [-]

Mature sequence osa-miR5522

Accession MIMAT0022156
Sequence

11 -  

aacaauaggaaugggaggcau

 - 31

Get sequence
Deep sequencing 618 reads, 2 experiments
Evidence experimental; Solexa [1]

References

1
PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).