miRBase entry: mtr-MIR167b

Stem-loop mtr-MIR167b


Accession
MI0019092
Description
Medicago truncatula mtr-MIR167b precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
3 open access papers mention mtr-MIR167b
(14 sentences)

Sequence

caaugacaguUGAAGCUGCCAGCAUGAUCUGugcuuuccuuccuguguauauacuuuaauuuccagcugaauuuaaauauaaccaaaaaaauaaauauguuuggucuaaauuuugaucaaacuuauauauauuuuugcuuauguuuaagucuggggugaguuuauuugugguaagaacaGAUCAUGUUGGAGCUUCACCuguuaaau
...((((((.(((((((.((((((((((((((.(((.((.....(((.((.((((.......((((....((((((((((((.((((((.(((.(((.((((((((........)))))))).))).))).)))))).)))))))))))))))))))).)).)))....)).))).))))))))))))))))))))).))))))...

Structure
caa      u       G              g   u  uuccu   u  a    uuaauuu    cuga            c      a   a   u        uaa 
   ugacag UGAAGCU CCAGCAUGAUCUGu cuu cc     gug au uacu       ccag    auuuaaauauaa caaaaa aua aua guuugguc   a
   |||||| ||||||| |||||||||||||| ||| ||     ||| || ||||       ||||    |||||||||||| |||||| ||| ||| ||||||||    
   auuguC ACUUCGA GGUUGUACUAGaca gaa gg     uau ug gugg       gguc    ugaauuuguauu guuuuu uau uau caaacuag   u
uaa      C       -              a   u  -uguu   u  a    -------    ----            c      a   a   u        uuu 


Annotation confidence Not enough data
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Genome context
chr7: 37444819-37445025 [+]

Database links

Mature mtr-miR167b-5p

Accession MIMAT0022233
Description Medicago truncatula mtr-miR167b-5p mature miRNA
Sequence 11 - UGAAGCUGCCAGCAUGAUCUG - 31
Evidence experimental
Illumina [1-2]

Mature mtr-miR167b-3p

Accession MIMAT0022234
Description Medicago truncatula mtr-miR167b-3p mature miRNA
Sequence 180 - GAUCAUGUUGGAGCUUCACC - 199
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553