Stem-loop sequence cin-mir-5612

Accession MI0019178
Description Ciona intestinalis miR-5612 stem-loop
Stem-loop 
---  u  gu  u  u    ua    uguu 
   ag ca  ug ug ugua  uaga    u
   || ||  || || ||||  ||||    u
   uc gu  ac ac acau  aucu    u
uac  u  ug  c  u    --    ugaa
Get sequence
Genome context
Coordinates (JGI2) Overlapping transcripts
1q: 6076844-6076901 [-]
sense
ENSCINT00000013638 ; F6U0L8_CIOIN; intron 1
ENSCINT00000023415 ; F6YQ79_CIOIN; intron 2
ENSCINT00000023415 ; F6YQ79_CIOIN; intron 2
ENSCINT00000023414 ; F6YQ85_CIOIN; intron 5
ENSCINT00000023414 ; F6YQ85_CIOIN; intron 5
1q: 6084032-6084089 [-]
sense
ENSCINT00000013638 ; F6U0L8_CIOIN; intron 1
ENSCINT00000023415 ; F6YQ79_CIOIN; intron 2
ENSCINT00000023415 ; F6YQ79_CIOIN; intron 2
ENSCINT00000023414 ; F6YQ85_CIOIN; intron 5
ENSCINT00000023414 ; F6YQ85_CIOIN; intron 5

Mature sequence cin-miR-5612-5p

Accession MIMAT0022351
Previous IDs cin-miR-5612*
Sequence

1 -  

agucaguuguuguuguauauaga

 - 23

Get sequence
Evidence not experimental

Mature sequence cin-miR-5612-3p

Accession MIMAT0022352
Previous IDs cin-miR-5612
Sequence

37 -  

uauacaucaccaguugucucau

 - 58

Get sequence
Evidence not experimental

References

1
PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).