Stem-loop sequence ath-MIR5649b

Accession

MI0019248 (change log)

Description

Arabidopsis thaliana miR5649b stem-loop

Gene family

MIPF0001369; MIR5649

Stem-loop

   u                                           ugcca 
5'  ucauauuauaguaaccaacauauucaauacuuucaaaugaaga     a
    |||||||||||||||||||||||||||||||||||||||||||     u
3'  aguauaauaucauugguuguauaaguuaugaaaguuuacuucu     u
   a                                           uuuua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 21360151-21360251 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR5649b

• ath-MIR5649b: chr1: 21360151-21360251 [-]
• ath-MIR5649a: chr1: 21360151-21360251 [+]

Database links

• miRBase Tracker:MI0019248

Mature sequence ath-miR5649b

• Accession: MIMAT0022437
• Sequence: 73 - auugaauauguugguuacuau - 93
• Evidence: experimental; Illumina [1]

References

1. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).