miRBase entry: gma-MIR5671a

Stem-loop gma-MIR5671a


Accession
MI0019265
Description
Glycine max gma-MIR5671a precursor miRNA
Gene family
MIPF0002004; MIR5671

Literature search
1 open access papers mention gma-MIR5671a
(1 sentences)

Sequence

auugauucauCAUGGAAGUGAAUCGGGUGACucuuccauguugaucucuccuccaccaccuccuuaaggugauggcaaauuucugaguuucccgaauuugcuuccauggugaaucaauc
(((((((((((((((((((((((((((.(((((.......(((.........(((.(((((.....))))).))))))......))))).)))).))))))))))))))))))))))).

Structure
-                       -    U     uuccaug   aucucuccu   c     c 
 auugauucauCAUGGAAGUGAAU CGGG GACuc       uug         cca caccu c
 ||||||||||||||||||||||| |||| |||||       |||         ||| ||||| u
 uaacuaagugguaccuucguuua gccc uugag       aac         ggu gugga u
c                       a    u     -ucuuua   ---------   a     a 


Annotation confidence Not enough data
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Genome context
chr11: 27953059-27953177 [-]

Database links

Mature gma-miR5671a

Accession MIMAT0022453
Description Glycine max gma-miR5671a mature miRNA
Sequence 11 - CAUGGAAGUGAAUCGGGUGAC - 31
Evidence experimental
Illumina [1-2], RT-PCR [1]

References

  1. PubMed ID: 21219599
    Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
    Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
    BMC Plant Biol (2011) 11:5

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553