Stem-loop sha-mir-190

Accession

MI0019595

Description

Sarcophilus harrisii sha-mir-190 precursor miRNA

Gene family

MIPF0000076; mir-190

Sequence

accuggaugccuuuucugcaggccucugugUGAUAUGUUUGAUAUAUUAGGUuguuauuuaauccaacuauauaucaaacauauuccuacaguguccugcccugucuccggggguucauaauauagucuauaaggcaacagggaggagug
.((((..((((((.....((((.(.(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..))))).).))))(((((....)))))..................)))))).))))........

Structure

-------a    ga      ---------------------------uucug    c u     -U                UA     uuau 
        ccug  ugccuu                                cagg c cugug  GAUAUGUUUGAUAUAU  GGUug    u
        ||||  ||||||                                |||| | |||||  ||||||||||||||||  |||||     
        ggac  acggaa                                gucc g gacau  uuauacaaacuauaua  ucaac    u
gugaggag    -a      uaucugauauaauacuugggggccucuguccc    u u     cc                --     cuaa 

Annotation confidence Not enough data

Genome context

GL834484.1: 2121690-2121839 [+]

Mature sha-miR-190

• Accession: MIMAT0022769
• Description: Sarcophilus harrisii sha-miR-190 mature miRNA
• Sequence: 31 - UGAUAUGUUUGAUAUAUUAGGU - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87