Stem-loop sha-mir-216a

Accession

MI0019603

Description

Sarcophilus harrisii sha-mir-216a precursor miRNA

Gene family

MIPF0000054; mir-216

Sequence

aaggcuaaccuggauggcugugaauuggcuUAAUCUCAGCUGGCAACUGUGagauauuaauaaauucccucacaguggucucugggauuaugcuaaacagagcaauuuccuugcccucauggaucaauagacuugcucaccaaccuaaau
.(((....)))((.(((.(((...(((((.(((((((((..(((.((((((((...............)))))))).))).))))))))).))))))))((((((.((..(((.((....))..)))..)).)))))).))).)).....

Structure

aaggcuaaccu  a   ---------------------------------------c   gaa     u         CU   A        auauua 
           gg ugg                                        ugu   uuggc UAAUCUCAG  GGC ACUGUGag      a
           || |||                                        |||   ||||| |||||||||  ||| ||||||||      u
           cc acc                                        aca   aaucg auuaggguc  cug ugacacuc      a
------uaaau  a   acucguucagauaacuagguacucccguuccuuuaacgag   ---     u         -u   g        ccuuaa 

Annotation confidence Not enough data

Genome context

GL834734.1: 1019942-1020091 [+]

Mature sha-miR-216a

• Accession: MIMAT0022777
• Description: Sarcophilus harrisii sha-miR-216a mature miRNA
• Sequence: 31 - UAAUCUCAGCUGGCAACUGUG - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87