Stem-loop sha-mir-199a

Accession

MI0019611

Description

Sarcophilus harrisii sha-mir-199a precursor miRNA

Gene family

MIPF0000040; mir-199

Sequence

ucaaaaggaauggcuuuaaaggggaggagaagaaucuucucaaauuccagccccaccagcccaguguucagacuaccuguccaggaaauugcaaauguguACAGUAGUCUGCACAUUGGUUaggcugggcuuggaaaagcaucgacucag
.....((.....(((((....(((((((......)))))))....((((((((..((...(((((((.((((((((.(((.((..............)).))))))))))).)))))))...))..)))).))))))))).....))...

Structure

ucaaa  gaaug     aaaggggaggagaagaaucuucucaaau    -    ca  agc       u        c   c  ggaaau 
     ag     gcuuu                            ucca gccc  cc   ccagugu cagacuac ugu ca      u
     ||     |||||                            |||| ||||  ||   ||||||| |||||||| ||| ||       
     uc     cgaaa                            aggu cggg  gg   GGUUACA GUCUGAUG ACA gu      g
--gac  agcua     ----------------------------    u    uc  aUU       C        -   u  guaaac 

Annotation confidence Not enough data

Genome context

GL841403.1: 248906-249055 [+]

Mature sha-miR-199a

• Accession: MIMAT0022785
• Description: Sarcophilus harrisii sha-miR-199a mature miRNA
• Sequence: 101 - ACAGUAGUCUGCACAUUGGUU - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87