miRBase entry: sha-mir-24-2

Stem-loop sha-mir-24-2

Accession

MI0019613

Description

Sarcophilus harrisii sha-mir-24-2 precursor miRNA

Gene family

MIPF0000041; mir-24

Sequence

cuuggccaccuuguucuucauccagucugucugcuucuaggucucacugggcucugccuccugugccuacugagcugaaacacaguugcuuuggauaaacUGGCUCAGUUCAGCAGGAAcaggagucuggccuucuccuggagacaccug
......................(((..((((....((((((.......(((((..(.(((((((.(((.(((((((((....(((((..........)))))..))))))))).))).))))))).).)))))...)))))))))).)))

Structure

cuuggccaccuuguucuucauc   uc    ugcu      ucucacu     cu c       g   a         aaca     gcuu 
                      cag  uguc    ucuagg       gggcu  g cuccugu ccu cugagcuga    caguu    u
                      |||  ||||    ||||||       |||||  | ||||||| ||| |||||||||    |||||     
                      guc  acag    aggucc       uccgg  c gaggacA GGA GACUUGACU    GUcaa    g
----------------------   -c    ----      ----ucu     -u u       A   C         --CG     auag

Annotation confidence Not enough data

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Genome context

GL841415.1: 821238-821387 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-24-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-24

Accession	MIMAT0022787
Description	Sarcophilus harrisii sha-miR-24 mature miRNA
Sequence	101 - UGGCUCAGUUCAGCAGGAA - 119
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87