Stem-loop sha-mir-128

Accession

MI0019625

Description

Sarcophilus harrisii sha-mir-128 precursor miRNA

Gene family

MIPF0000048; mir-128

Sequence

uugucauuuaaccauguuuguuuaauaucauggaauaauuggccuuauuugugagcuguuggauucggggccguagcacugucugagagguuuacauuucUCACAGUGAACCGGUCUCUUUuucagcugcuuccuggcuucuuuuuacuc
..((((.(((.(((((............)))))..))).)))).........((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).))))..................

Structure

uugucauuuaaccauguuuguuuaauaucauggaauaauuggccuuauuugu    u      uuc       uag      cu       u 
                                                    gagc guugga   ggggccg   cacugu  gagaggu u
                                                    |||| ||||||   |||||||   ||||||  |||||||  
                                                    uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
----------------------------------cucauuuuucuucggucc    u      UUU       CAA      --       c 

Annotation confidence Not enough data

Genome context

GL849609.1: 2503876-2504025 [+]

Mature sha-miR-128

• Accession: MIMAT0022798
• Description: Sarcophilus harrisii sha-miR-128 mature miRNA
• Sequence: 101 - UCACAGUGAACCGGUCUCUUU - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87