Stem-loop sha-mir-10b

Accession

MI0019626

Description

Sarcophilus harrisii sha-mir-10b precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

1 open access papers mention sha-mir-10b
(1 sentences)

Sequence

auaacagaauguuauuacguugucuauauaUACCCUGUAGAACCGAAUuugugugguauuuacauagucacagauucgauucuaggggaauauauggucgaugcaaaaacuucacauuucugcaaaugguuaaaauuauaaaugucuggg
....((((...((((..(((((.((((((((.((((.(((((.((((((((((.(.(((....))).))))))))))).))))))))).)))))))).)))))...........(((((....))))).........))))...))))..

Structure

auaa    aug    --------------------------------ua     u        A    G     C          u g   u 
    caga   uuau                                  cguug cuauauaU CCCU UAGAA CGAAUuugug g uau u
    ||||   ||||                                  ||||| |||||||| |||| ||||| |||||||||| | |||  
    gucu   aaua                                  guagc gguauaua gggg aucuu gcuuagacac u aua a
--gg    gua    uuaaaauugguaaacgucuuuacacuucaaaaac     u        a    -     a          - g   c 

Annotation confidence Not enough data

Genome context

GL849635.1: 2022341-2022490 [+]

Mature sha-miR-10b

• Accession: MIMAT0022799
• Description: Sarcophilus harrisii sha-miR-10b mature miRNA
• Sequence: 31 - UACCCUGUAGAACCGAAU - 48
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87