miRBase entry: sha-let-7a

Stem-loop sha-let-7a


Accession
MI0019628
Description
Sarcophilus harrisii sha-let-7a precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention sha-let-7a
(1 sentences)

Sequence

uccagccauugugauugcacgcacccagguUGAGGUAGUAGGUUGUAUAGUuuagaauuacaucaagggagauaacuguacagccuccuagcuuuccuugggucuugcacaaaacaccauggugagaaugaucaugauuuuuccaggccu
((..(((((.(((..((((.(.(((((((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).)))..)))))))).)))).....))).)))))..)).......................

Structure
-----------------------  ca     u   ---au    c c       uU   G   U             uagaauuac   aa 
                       uc  gccau gug     ugca g acccagg  GAG UAG AGGUUGUAUAGUu         auc  g
                       ||  ||||| |||     |||| | |||||||  ||| ||| |||||||||||||         |||   
                       ag  uggua cac     acgu c uggguuc  uuc auc uccgacaugucaa         uag  g
uccggaccuuuuuaguacuagua  ag     c   aaaac    u -       cu   g   c             ---------   ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL849656.1: 1022775-1022924 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sha-let-7a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sha-let-7a

Accession MIMAT0022801
Description Sarcophilus harrisii sha-let-7a mature miRNA
Sequence 31 - UGAGGUAGUAGGUUGUAUAGU - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87