Stem-loop sequence sha-let-7a

AccessionMI0019628 (change log)
DescriptionSarcophilus harrisii let-7a stem-loop
Gene family MIPF0000002; let-7
Literature search

1 open access papers mention sha-let-7a
(1 sentences)

Stem-loop
   --------------------------uccagccauugugauu   c c       uu   g   u             uagaa ua a 
5'                                           gca g acccagg  gag uag agguuguauaguu     u  c u
                                             ||| | |||||||  ||| ||| |||||||||||||     |  | c
3'                                           cgu c uggguuc  uuc auc uccgacaugucaa     a  g a
   uccggaccuuuuuaguacuaguaagagugguaccacaaaaca   u -       cu   g   c             --uag gg a 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (DEVIL7_0) Overlapping transcripts
GL849656.1: 1022775-1022924 [+]
intergenic
Clustered miRNAs
< 10kb from sha-let-7a
sha-mir-100GL849656.1: 1017612-1017761 [+]
sha-let-7aGL849656.1: 1022775-1022924 [+]
Database links

Mature sequence sha-let-7a

Accession MIMAT0022801
Sequence

31 - 

ugagguaguagguuguauagu

 - 51

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:20044575 "The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer" Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT Science. 327:84-87(2010).