miRBase entry: sha-mir-30e

Stem-loop sha-mir-30e

Accession

MI0019634

Description

Sarcophilus harrisii sha-mir-30e precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

uuccagcucucuuugggcagucuuugccacUGUAAACAUCCUUGACUGGAAGCUGuaaggugcuuggaggagcuuucagucggauguuuacagcggcaggcugccacaggcaucccagccacaaguagggugggaagcagugcugccuca
...((((.((..(((((((((((..(((.((((((((((((..(((((((((((................))))))))))))))))))))))).))))))))))).)))((.(((((.((.......)).))))).)))).)))).....

Structure

--uuc    u  ---------------------------cu   -        uu   a            UU           Guaaggu 
     cagc cu                             uug ggcagucu  gcc cUGUAAACAUCC  GACUGGAAGCU       g
     |||| ||                             ||| ||||||||  ||| ||||||||||||  |||||||||||        
     gucg ga                             gac ccgucgga  cgg gacauuuguagg  cugacuuucga       c
acucc    u  cgaagggugggaugaacaccgacccuacg   a        --   c            --           ggagguu

Annotation confidence Not enough data

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Genome context

GL849784.1: 535960-536109 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-30e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-30e

Accession	MIMAT0022807
Description	Sarcophilus harrisii sha-miR-30e mature miRNA
Sequence	31 - UGUAAACAUCCUUGACUGGAAGCUG - 55
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87