Stem-loop sha-mir-181a-1

Accession

MI0019639

Description

Sarcophilus harrisii sha-mir-181a-1 precursor miRNA

Gene family

MIPF0000007; mir-181

Sequence

uuuuuugagguugcuucagugAACAUUCAACGCUGUCGGUgaguuuggaauuaaaaugaaaACCAUCGACCGUUGAUUGUacccuacagcuaaccgac
........(((((((..((.(.(((.((((((..(((((((.((((.............))))))))))))))))).))).).))..))).))))...

Structure

uuuuuuga    -   uc  u A   U      CU       a    ggaau 
        gguu gcu  ag g ACA UCAACG  GUCGGUg guuu     u
        |||| |||  || | ||| ||||||  ||||||| ||||     a
        ccaa cga  uc c UGU AGUUGC  CAGCUAC CAaa     a
-----cag    u   ca  c a   U      --       -    aguaa 

Annotation confidence Not enough data

Genome context

GL856772.1: 2114846-2114943 [-]

Mature sha-miR-181a-5p

• Accession: MIMAT0022770
• Description: Sarcophilus harrisii sha-miR-181a-5p mature miRNA
• Sequence: 22 - AACAUUCAACGCUGUCGGU - 40
• Evidence: experimental ; Illumina [1]

Mature sha-miR-181a-3p

• Accession: MIMAT0022840
• Description: Sarcophilus harrisii sha-miR-181a-3p mature miRNA
• Sequence: 62 - ACCAUCGACCGUUGAUUGU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87