Stem-loop sha-mir-142

Accession

MI0019644

Description

Sarcophilus harrisii sha-mir-142 precursor miRNA

Gene family

MIPF0000084; mir-142

Sequence

acaaacacagacagacagacagugcagucaCCCAUAAAGUAGAAAGCACUAcuaacagcaauguaggguguaguguuuccuacuuuauggaugaguguacugugggcuucggagacacgccgucagucacccucaccauccgucuucugg
.......((((.((((..((((((((.(((.(((((((((((.(((((((((..(((....))).....))))))))).))))))))))).))).)))))))).((((.(((.......)))..)))).............)))))))).

Structure

acaaaca    c    ------------------------------------ag        g   C           A         ---ua   g 
       caga agac                                      acagugca uca CCAUAAAGUAG AAGCACUAc     aca c
       |||| ||||                                      |||||||| ||| ||||||||||| |||||||||     |||  
       gucu ucug                                      ugucaugu agu gguauuucauc uuugugaug     ugu a
------g    -    ccuaccacucccacugacugccgcacagaggcuucggg        g   a           c         uggga   a 

Annotation confidence Not enough data

Genome context

GL856813.1: 835351-835500 [+]

Mature sha-miR-142

• Accession: MIMAT0022816
• Description: Sarcophilus harrisii sha-miR-142 mature miRNA
• Sequence: 31 - CCCAUAAAGUAGAAAGCACUA - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87