miRBase entry: sha-mir-93

Stem-loop sha-mir-93

Accession

MI0019647

Description

Sarcophilus harrisii sha-mir-93 precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

auccuaggucucaucagucuuggggggcucCAAAGUGCUGUUCGUGCAGGUaguguaauaacccaaccuacugcugagcuagcacuucucgagccccuaagacacuaggccccuggaauuccuaggauccaaaccuguuuguuuuuccuu
((((((((........((((((((((.(((..((((((((((((.((((.(((.((.........)))))))))))))).)))))))...))))))))))))).((((....))))....))))))))......................

Structure

----------------------        ---------ucucauca          g   -CA       -     U    G   u  aau 
                      auccuagg                 gucuuggggg cuc   AAGUGCU GUUCG GCAG Uag gu   a
                      ||||||||                 |||||||||| |||   ||||||| ||||| |||| ||| ||   a
                      uaggaucc                 cagaaucccc gag   uucacga cgagu cguc auc ca   c
uuccuuuuuguuuguccaaacc        uuaagguccccggauca          -   cuc       u     -    -   -  acc

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

GL856864.1: 887817-887966 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-93

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-93

Accession	MIMAT0022819
Description	Sarcophilus harrisii sha-miR-93 mature miRNA
Sequence	31 - CAAAGUGCUGUUCGUGCAGGU - 51
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87