miRBase entry: sha-mir-25

Stem-loop sha-mir-25

Accession

MI0019648

Description

Sarcophilus harrisii sha-mir-25 precursor miRNA

Gene family

MIPF0000013; mir-25

Sequence

ggggggggcauuagagcaggacucuucucccuuacaggccaucuggacuggccaguguugagaggcggagacuugggcaauugcugaacacugcccugggCAUUGCACUUGUCUCGGUCugacagugcuggcaaaacacagcacauccug
((((((((....((((.....)))))))))))).((((((....((((.((.(((((((.((.(((((....((.(((....))).))..))))))).)))))))..)).)))).))))))...((((((........))))))......

Structure

ggggggggcauuagagcaggacucuucucccuua      aucu    u  -c       g  a     agac  g   a 
                                  caggcc    ggac gg  caguguu ag ggcgg    uu ggc a
                                  ||||||    |||| ||  ||||||| || |||||    || |||  
                                  guCUGG    UCUG UC  GUUACgg uc ccguc    aa ucg u
-----guccuacacgacacaaaacggucgugaca      ---C    U  AC       g  -     --ac  g   u

Annotation confidence Not enough data

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Genome context

GL856864.1: 888073-888222 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-25

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-25

Accession	MIMAT0022820
Description	Sarcophilus harrisii sha-miR-25 mature miRNA
Sequence	101 - CAUUGCACUUGUCUCGGUC - 119
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87