miRBase entry: sha-mir-200c

Stem-loop sha-mir-200c

Accession

MI0019653

Description

Sarcophilus harrisii sha-mir-200c precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

cccgggccugccucccucgggcucuccuggcccggccucgggcaggugggacgggugccccaucuuacccagcaguguuugggugcugcuuggacgucucUAAUACUGCCGGGUAACGAuggagcuccuuuccuugugacgccuccuaug
.....((((((((...(((((((.....)))))))....))))))))((((.(((.((.(((((((((((.((((((((.(((((((....)).)).))).)))))))).)))))).))))).)).))).))))................

Structure

cccgggccugccucccucgggcucuccuggcccggccucgggcaggu    c   u  c     -      a        u   -  -  g 
                                               ggga ggg gc ccauc uuaccc gcaguguu ggg ug cu c
                                               |||| ||| || ||||| |||||| |||||||| ||| || ||  
                                               uccu ucc cg gguAG AAUGGG CGUCAUAA cuc gc gg u
-------------------------------guauccuccgcagugu    u   u  a     C      C        U   u  a  u

Annotation confidence Not enough data

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Genome context

GL861612.1: 2158021-2158170 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-200c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-200c

Accession	MIMAT0022825
Description	Sarcophilus harrisii sha-miR-200c mature miRNA
Sequence	101 - UAAUACUGCCGGGUAACGA - 119
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87