Stem-loop gma-MIR4416b

Accession

MI0019722

Description

Glycine max gma-MIR4416b precursor miRNA

Gene family

MIPF0001389; MIR4416

Literature search

4 open access papers mention gma-MIR4416b
(6 sentences)

Sequence

aucuuugaucUGGGUGAGAGAAACGCGUAUCgaugagauucagggcuuacuaguucacacaguugcauccacacaccaauuguuuuaacaauuuggagugaguguguuuugaucgauacggguccucucaccuagacuagaguu
..(((((.((((((((((((..((.(((((((((.(((....(((((....)))))(((((.((((.((((......((((((....)))))))))))))).)))))))).))))))))).)).)))))))))))).)))))..

Structure

au     a            AA  G         g   uucagggcuuacuaguuc     g    a    cacacc      u 
  cuuug ucUGGGUGAGAG  AC CGUAUCgau aga                  acaca uugc ucca      aauugu u
  ||||| ||||||||||||  || ||||||||| |||                  ||||| |||| ||||      ||||||  
  gagau agauccacucuc  ug gcauagcua uuu                  ugugu agug aggu      uuaaca u
uu     c            -c  g         g   ------------------     g    -    ------      a 

Annotation confidence Not enough data

Genome context

chr3: 36067834-36067977 [-]

Mature gma-miR4416b

• Accession: MIMAT0023177
• Description: Glycine max gma-miR4416b mature miRNA
• Sequence: 11 - UGGGUGAGAGAAACGCGUAUC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553